Strain identifier

BacDive ID: 14509

Type strain: Yes

Species: Staphylococcus caprae

Strain Designation: 143.22

Strain history: CIP <- 1994, L.A. Devriese, Ghent Univ., Ghent, Belgium: strain 143.22 <- B. Poutrel, INRA, Nouzilly, France

NCBI tax ID(s): 1255645 (strain), 29380 (species)

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General

@ref: 8956

BacDive-ID: 14509

DSM-Number: 20608

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, coccus-shaped, human pathogen

description: Staphylococcus caprae 143.22 is a facultative anaerobe, mesophilic, Gram-positive human pathogen that was isolated from goat milk.

NCBI tax id

NCBI tax idMatching level
29380species
1255645strain

strain history

@refhistory
8956<- K.H. Schleifer <- B. Poutrel, 143.22
117166CIP <- 1994, L.A. Devriese, Ghent Univ., Ghent, Belgium: strain 143.22 <- B. Poutrel, INRA, Nouzilly, France

doi: 10.13145/bacdive14509.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus caprae
  • full scientific name: Staphylococcus caprae Devriese et al. 1983

@ref: 8956

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus caprae

full scientific name: Staphylococcus caprae Devriese et al. 1983 emend. Kawamura et al. 1998

strain designation: 143.22

type strain: yes

Morphology

cell morphology

  • @ref: 117166
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

@reftype of hemolysisincubation periodhemolysis ability
8956gamma1-2 days
1171661

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8956COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8956TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
40919MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
117166CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
8956positivegrowth37mesophilic
40919positivegrowth37mesophilic
117166positivegrowth37-45
117166nogrowth15psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 117166
  • oxygen tolerance: facultative anaerobe

murein

  • @ref: 8956
  • murein short key: A11.03
  • type: A3alpha L-Lys-Gly2-4-L-Ser1-2-Gly

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
117166nitrate+reduction17632
117166nitrite-reduction16301
117166tributyrin-hydrolysis35020
68375urea-hydrolysis16199
68375arginine+hydrolysis29016
68375ornithine-degradation18257
68375esculin-hydrolysis4853
68375D-glucose+fermentation17634
68375D-fructose+fermentation15824
68375maltose-fermentation17306
68375raffinose-fermentation16634
68375D-ribose-fermentation16988
68375cellobiose-fermentation17057
68375nitrate+reduction17632
68375sucrose-fermentation17992
68375N-acetylglucosamine-fermentation59640
68375turanose-fermentation32528
68375arabinose-fermentation22599

antibiotic resistance

  • @ref: 68375
  • ChEBI: 28368
  • metabolite: novobiocin
  • is antibiotic: yes
  • is sensitive: yes
  • sensitivity conc.: 1.8 µg

metabolite production

@refChebi-IDmetaboliteproduction
6837515688acetoinyes
11716635581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6837515688acetoin+
11716615688acetoin+

enzymes

@refvalueactivityec
8956catalase+1.11.1.6
8956cytochrome-c oxidase-1.9.3.1
68375beta-glucuronidase-3.2.1.31
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase+3.5.3.6
68375urease-3.5.1.5
117166oxidase-
117166beta-galactosidase+3.2.1.23
117166alcohol dehydrogenase+1.1.1.1
117166gelatinase-
117166DNase+/-
117166catalase+1.11.1.6
117166coagulase-
117166lysine decarboxylase-4.1.1.18
117166ornithine decarboxylase-4.1.1.17
117166urease+3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
117166+--------++++----+---+--------++-----------------

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
8956-+--+++-++----++--++------
8956-+--+++-+++---++--++------
8956-+--+++/--+/-+/-----++--+-------
8956-+--+++-+-----++--+/--------

Isolation, sampling and environmental information

isolation

@refsample typesampling datecountryorigin.countrycontinent
8956goat milk
46289Goat milk1983-04-07FranceFRAEurope
117166Food, Goat, milkFranceFRAEurope

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Caprinae (Sheep/Goat)
#Host Body Product#Fluids#Milk

taxonmaps

  • @ref: 69479
  • File name: preview.99_86.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3;97_3;98_3;99_86&stattab=map
  • Last taxonomy: Staphylococcus
  • 16S sequence: Y12593
  • Sequence Identity:
  • Total samples: 8633
  • soil counts: 44
  • aquatic counts: 284
  • animal counts: 8287
  • plant counts: 18

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
8956yesyes2Risk group (German classification)
1171661Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Staphylococcus caprae 16S ribosomal RNA gene, partial sequenceAF041362929ena29380
20218Staphylococcus caprae strain DSM 20608 16S ribosomal RNA gene, partial sequenceAY688036464ena29380
20218S.capprae 16S rRNA geneY125931470ena29380
20218S.caprae gene for 16S ribosomal RNAZ26890771ena29380
8956Staphylococcus caprae rrn gene for 16S ribosomal RNAAB0099351492ena29380

GC content

  • @ref: 8956
  • GC-content: 36.1

External links

@ref: 8956

culture collection no.: DSM 20608, ATCC 35538, CCM 3573, CCUG 15604, CIP 104000

straininfo link

  • @ref: 83646
  • straininfo: 13072

literature

  • topic: Phylogeny
  • Pubmed-ID: 36249367
  • title: Isolation and Identification of Flavones Responsible for the Antibacterial Activities of Tillandsia bergeri Extracts.
  • authors: Lo MM, Benfodda Z, Dunyach-Remy C, Benimelis D, Roulard R, Fontaine JX, Mathiron D, Quero A, Molinie R, Meffre P
  • journal: ACS Omega
  • DOI: 10.1021/acsomega.2c04195
  • year: 2022

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8956Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20608)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20608
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40919Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15859
46289Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 15604)https://www.ccug.se/strain?id=15604
68371Automatically annotated from API 50CH acid
68375Automatically annotated from API ID32STA
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83646Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13072.1StrainInfo: A central database for resolving microbial strain identifiers
117166Curators of the CIPCollection of Institut Pasteur (CIP 104000)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104000