Strain identifier

BacDive ID: 144750

Type strain: No

Species: Rodentibacter pneumotropicus

NCBI tax ID(s): 758 (species)

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General

@ref: 48463

BacDive-ID: 144750

keywords: Bacteria, microaerophile, mesophilic

description: Rodentibacter pneumotropicus CCUG 26453 is a microaerophile, mesophilic bacterium that was isolated from Bird.

NCBI tax id

  • NCBI tax id: 758
  • Matching level: species

doi: 10.13145/bacdive144750.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Rodentibacter
  • species: Rodentibacter pneumotropicus
  • full scientific name: Rodentibacter pneumotropicus (Jawetz 1950) Adhikary et al. 2017

  • synonyms

    • @ref: 20215
    • synonym: Pasteurella pneumotropica

@ref: 48463

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Rodentibacter

species: Rodentibacter pneumotropicus

type strain: no

Culture and growth conditions

culture temp

  • @ref: 48463
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 48463
  • oxygen tolerance: microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837418257ornithine-degradation
6837429016arginine-hydrolysis
6837425094lysine-degradation
6837416199urea+hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol-builds acid from
6837417306maltose-builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan+energy source
6837417634D-glucose-builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose-builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose-builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol-builds acid from
6837717634D-glucose+builds acid from
6837715824D-fructose-builds acid from
6837717306maltose+builds acid from
6837717992sucrose+builds acid from
6837718257ornithine+degradation
6837716199urea+hydrolysis
6837727897tryptophan+energy source

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleyes
6837435581indoleyes

metabolite tests

@refChebi-IDmetaboliteindole test
6837735581indole+
6837435581indole+

enzymes

@refvalueactivityec
68377tryptophan deaminase+4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase+3.1.3.1
68377lipase-
68377urease+3.5.1.5
68377ornithine decarboxylase+4.1.1.17
68377beta-lactamase-3.5.2.6
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase-
68374urease+3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    48463C12:00.212
    48463C14:018.514
    48463C15:00.415
    48463C16:028.116
    48463C18:0118
    48463C12:0 ALDE ?0.210.915
    48463C13:0 ISO 2OH0.313.814
    48463C14:0 3OH/C16:1 ISO I7.715.485
    48463C16:1 ω5c0.215.908
    48463C16:1 ω7c35.615.819
    48463C18:1 ω7c /12t/9t1.117.824
    48463C18:1 ω9c1.817.769
    48463C18:2 ω6,9c/C18:0 ANTE417.724
    48463Unidentified0.313.94
    48463Unidentified0.215.177
    48463unknown 14.5030.514.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
48463-++--+----+---------

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
48463---+----+-------+-+-------------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
48463-+-++++-+---+

Isolation, sampling and environmental information

isolation

  • @ref: 48463
  • sample type: Bird
  • sampling date: 1984
  • geographic location: Hannover
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Birds

External links

@ref: 48463

culture collection no.: CCUG 26453, MCCM 00252

straininfo link

  • @ref: 99890
  • straininfo: 56157

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
48463Curators of the CCUGhttps://www.ccug.se/strain?id=26453Culture Collection University of Gothenburg (CCUG) (CCUG 26453)
68374Automatically annotated from API ID32E
68377Automatically annotated from API NH
68382Automatically annotated from API zym
99890Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID56157.1