Strain identifier
version 8.1 (current version)
General
@ref: 48419
BacDive-ID: 144707
keywords: genome sequence, Bacteria, motile
description: Leclercia adecarboxylata CCUG 26363 is a motile bacterium that was isolated from Human ?.
NCBI tax id
- NCBI tax id: 83655
- Matching level: species
doi: 10.13145/bacdive144707.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Leclercia
- species: Leclercia adecarboxylata
- full scientific name: Leclercia adecarboxylata (Leclerc 1962) Tamura et al. 1987
synonyms
- @ref: 20215
- synonym: Escherichia adecarboxylata
@ref: 48419
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Leclercia
species: Leclercia adecarboxylata
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.085 | |
| 69480 | 99.994 | negative |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.965 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 48419
- sample type: Human ?
- geographic location: New Jersey
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Host
- Cat2: #Human
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Enterobacteriaceae bacterium ATCC 29904 | GCA_000755535 | scaffold | ncbi | 1593232 |
| 66792 | Enterobacteriaceae bacterium ATCC 29904 | 1593232.4 | wgs | patric | 1593232 |
| 66792 | Enterobacteriaceae bacterium ATCC 29904 | 2648501357 | draft | img | 1593232 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 90.414 | no |
| flagellated | no | 64.467 | no |
| gram-positive | no | 98.052 | no |
| anaerobic | no | 96.2 | no |
| aerobic | yes | 81.72 | no |
| halophile | no | 84.831 | no |
| spore-forming | no | 92.91 | no |
| glucose-util | yes | 96.574 | no |
| thermophile | no | 99.46 | no |
| glucose-ferment | yes | 92.418 | no |
External links
@ref: 48419
culture collection no.: CCUG 26363, ATCC 29904, LMG 5336
straininfo link
- @ref: 99852
- straininfo: 6614
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 48419 | Curators of the CCUG | https://www.ccug.se/strain?id=26363 | Culture Collection University of Gothenburg (CCUG) (CCUG 26363) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 99852 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID6614.1 |