Strain identifier

BacDive ID: 14469

Type strain: No

Species: Staphylococcus aureus

Strain Designation: #494

Strain history: <- CCUG <- NCTC <- ATCC

NCBI tax ID(s): 1280 (species)

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General

@ref: 7597

BacDive-ID: 14469

DSM-Number: 18588

keywords: genome sequence, Bacteria, aerobe, mesophilic, human pathogen

description: Staphylococcus aureus #494 is an aerobe, mesophilic human pathogen that was isolated from Turkey salad.

NCBI tax id

  • NCBI tax id: 1280
  • Matching level: species

strain history

  • @ref: 7597
  • history: <- CCUG <- NCTC <- ATCC

doi: 10.13145/bacdive14469.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus aureus
  • full scientific name: Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Staphylococcus aureus subsp. anaerobius

@ref: 7597

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus aureus

full scientific name: Staphylococcus aureus Rosenbach 1884

strain designation: #494

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7597COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
7597TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7597positivegrowth37mesophilic
48296positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 48296
  • oxygen tolerance: aerobe

antibiogram

  • @ref: 7597
  • medium: Mueller-Hinton Agar
  • Penicillin G: 20
  • oxacillin: 28
  • ampicillin: 20
  • ticarcillin: 24
  • mezlocillin: 20
  • cefalotin: 32-34
  • cefazolin: 28-30
  • cefotaxime: 30
  • aztreonam: 0
  • imipenem: 48-50
  • tetracycline: 32
  • chloramphenicol: 26-28
  • gentamycin: 22
  • amikacin: 22
  • vancomycin: 20
  • erythromycin: 28-30
  • lincomycin: 28
  • ofloxacin: 26-28
  • norfloxacin: 30
  • colistin: 0
  • pipemidic acid: 10-12
  • nitrofurantoin: 20
  • bacitracin: 16
  • polymyxin b: 6-8
  • kanamycin: 32
  • neomycin: 20-22
  • doxycycline: 30
  • ceftriaxone: n.d.
  • clindamycin: n.d.
  • fosfomycin: n.d.
  • moxifloxacin: n.d.
  • linezolid: n.d.
  • nystatin: n.d.
  • quinupristin/dalfopristin: n.d.
  • teicoplanin: n.d.
  • piperacillin/tazobactam: n.d.

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837516199urea-hydrolysis
6837529016arginine+hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose+fermentation
6837517306maltose+fermentation
6837517716lactose+fermentation
6837527082trehalose+fermentation
6837516899D-mannitol+fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine+fermentation
6837532528turanose+fermentation
6837522599arabinose-fermentation

enzymes

@refvalueactivityec
68375beta-glucuronidase-3.2.1.31
68375alkaline phosphatase+3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase+3.5.3.6
68375urease-3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
7597-+--+++++++---++--++++++--
7597-+--+++++++---+---+--+++--
7597-+--+++++++---++--++/--+++--
48296-+--+++++++---++--+--+++--

Isolation, sampling and environmental information

isolation

@refsample type
7597Turkey salad
48296Turkey salad

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Food
#Host#Birds

Safety information

risk assessment

  • @ref: 7597
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus aureus NCTC10656GCA_900458155contigncbi1280
66792Staphylococcus aureus strain NCTC106561280.18101wgspatric1280
66792Staphylococcus aureus ATCC 23235GCA_028596145completencbi1280

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno89.75no
flagellatedno91.627no
gram-positiveyes89.583no
anaerobicno99.57yes
aerobicyes89.047yes
halophileyes94.509no
spore-formingno93.58no
glucose-fermentyes87.053no
thermophileno99.724yes
glucose-utilyes88.575no

External links

@ref: 7597

culture collection no.: DSM 18588, ATCC 23235, CCUG 25926, NCTC 10656

straininfo link

  • @ref: 83608
  • straininfo: 37955

literature

  • topic: Pathogenicity
  • Pubmed-ID: 33387272
  • title: Biomedical Applications of Mycosynthesized Selenium Nanoparticles Using Penicillium expansum ATTC 36200.
  • authors: Hashem AH, Khalil AMA, Reyad AM, Salem SS
  • journal: Biol Trace Elem Res
  • DOI: 10.1007/s12011-020-02506-z
  • year: 2021
  • mesh: Anti-Bacterial Agents/pharmacology, Humans, *Metal Nanoparticles, Microbial Sensitivity Tests, *Nanoparticles, *Penicillium, *Selenium/pharmacology, Spectroscopy, Fourier Transform Infrared

Reference

@idauthorscataloguedoi/urltitle
7597Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18588)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18588
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
48296Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 25926)https://www.ccug.se/strain?id=25926
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68375Automatically annotated from API ID32STA
83608Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID37955.1StrainInfo: A central database for resolving microbial strain identifiers