Strain identifier

BacDive ID: 14467

Type strain: No

Species: Staphylococcus aureus

Strain history: <- CCUG <- NCTC <- ATCC

NCBI tax ID(s): 1280 (species)

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General

@ref: 7595

BacDive-ID: 14467

DSM-Number: 18586

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, human pathogen

description: Staphylococcus aureus DSM 18586 is an aerobe, mesophilic, Gram-positive human pathogen that was isolated from human faeces.

NCBI tax id

  • NCBI tax id: 1280
  • Matching level: species

strain history

  • @ref: 7595
  • history: <- CCUG <- NCTC <- ATCC

doi: 10.13145/bacdive14467.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus aureus
  • full scientific name: Staphylococcus aureus Rosenbach 1884 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Staphylococcus aureus subsp. anaerobius

@ref: 7595

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus aureus

full scientific name: Staphylococcus aureus Rosenbach 1884

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7595COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
7595TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7595positivegrowth37mesophilic
48294positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 48294
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no98
69480no99.46

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837529016arginine+hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose+fermentation
6837517306maltose+fermentation
6837517716lactose+fermentation
6837527082trehalose+fermentation
6837516899D-mannitol+fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine+fermentation
6837532528turanose+fermentation
6837522599arabinose-fermentation

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68375beta-glucuronidase-3.2.1.31
68375alkaline phosphatase+3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase+3.5.3.6

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
7595-+--+++++++---++--++-+++--
7595++--+++++++---++--+--+++--
7595++-+++++++---++--+-+/-+++--
48294++--+++++++---++--+--+++--

Isolation, sampling and environmental information

isolation

@refsample type
7595human faeces
48294Human feces,child with acute,non-specific diarrhea

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3;97_3;98_3;99_3&stattab=map
  • Last taxonomy: Staphylococcus
  • 16S sequence: DQ997837
  • Sequence Identity:
  • Total samples: 23199
  • soil counts: 353
  • aquatic counts: 991
  • animal counts: 21663
  • plant counts: 192

Safety information

risk assessment

  • @ref: 7595
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Staphylococcus aureus strain ATCC 14458 16S ribosomal RNA gene, partial sequenceDQ2694981518ena1280
20218Staphylococcus aureus strain ATCC 14458 16S ribosomal RNA gene, partial sequenceDQ9978371516ena1280

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus aureus NCTC10654GCA_900458275contigncbi1280
66792Staphylococcus aureus ATCC 14458GCA_002088085scaffoldncbi1280
66792Staphylococcus aureus strain ATCC 144581280.15003plasmidpatric1280
66792Staphylococcus aureus strain ATCC 144581280.12238wgspatric1280
66792Staphylococcus aureus strain ATCC 144581280.15005plasmidpatric1280
66792Staphylococcus aureus strain ATCC 144581280.15004plasmidpatric1280
66792Staphylococcus aureus strain NCTC106541280.18109wgspatric1280
66792Staphylococcus aureus ATCC 14458GCA_028596165completencbi1280

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno98no
motileno89.986no
flagellatedno91.209no
gram-positiveyes89.448no
anaerobicno99.551yes
aerobicyes89.607no
halophileyes94.134no
spore-formingno92.655no
glucose-fermentyes85.864yes
thermophileno99.799yes
glucose-utilyes88.27no

External links

@ref: 7595

culture collection no.: DSM 18586, ATCC 14458, CCUG 25924, NCTC 10654, FDA 243

straininfo link

  • @ref: 83606
  • straininfo: 36085

literature

topicPubmed-IDtitleauthorsjournalyearmeshtopic2DOI
Cultivation32015[Studies on staphylococcal enterotoxin B. II. Production and regulation (author's transl)].Tai FH, Wang NL, Chung JS, Chen CPZhonghua Min Guo Wei Sheng Wu Xue Za Zhi1978Culture Media, Enterotoxins/*biosynthesis, Glucose/pharmacology, Hydrogen-Ion Concentration, Staphylococcus aureus/*metabolismBiotechnology
Cultivation233290Chemical and electron microscopic studies of factors associated with the release of penicillinase from Staphylococcus aureus.Kim TK, Hammond JB, Chipley JRAntonie Van Leeuwenhoek1979Alkanesulfonates/pharmacology, *Alkanesulfonic Acids, Buffers/pharmacology, Cell Fractionation, Citrates/pharmacology, Culture Media, Lysostaphin/pharmacology, Penicillinase/*metabolism, Sodium Chloride/pharmacology, Staphylococcus aureus/drug effects/*enzymology/ultrastructure, Tromethamine/pharmacology, beta-Lactamases/*metabolismMetabolism10.1007/BF00403658
Metabolism1260525Enterotoxin B formation by fermentation mutants of Staphylococcus aureus.Altenbern RACan J Microbiol1976Carbohydrate Metabolism, Enterotoxins/*biosynthesis, Fermentation, Lactose/metabolism, Mannitol/metabolism, Methylnitronitrosoguanidine, Mutagens, Mutation, Staphylococcus aureus/*metabolism, TemperaturePathogenicity10.1139/m76-025
Stress25285500Gene-related strain variation of Staphylococcus aureus for homologous resistance response to acid stress.Lee S, Ahn S, Lee H, Kim WI, Kim HY, Ryu JG, Kim SR, Choi KH, Yoon YJ Food Prot2014Acids/*pharmacology, Adaptation, Physiological, Caseins, *Drug Resistance, Bacterial, Gene Expression Regulation, Bacterial, *Genes, Bacterial, Hot Temperature, Hydrogen-Ion Concentration, Lycopersicon esculentum/*microbiology, Protein Hydrolysates, Real-Time Polymerase Chain Reaction, Species Specificity, Staphylococcus aureus/*drug effects/genetics, Stress, PhysiologicalPhylogeny10.4315/0362-028X.JFP-14-070
28115886Mathematical Model for Predicting the Growth Probability of Staphylococcus aureus in Combinations of NaCl and NaNO2 under Aerobic or Evacuated Storage Conditions.Lee J, Gwak E, Ha J, Kim S, Lee S, Lee H, Oh MH, Park BY, Oh NS, Choi KH, Yoon YKorean J Food Sci Anim Resour201610.5851/kosfa.2016.36.6.752
Genetics28684583Draft Genome Sequences of Two ATCC Staphylococcus aureus subsp. aureus Strains.Putonti C, Kalesinskas L, Cudone E, Engelbrecht KC, Koenig DW, Wolfe AJGenome Announc201710.1128/genomeA.00618-17

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7595Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18586)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18586
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
48294Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 25924)https://www.ccug.se/strain?id=25924
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68375Automatically annotated from API ID32STA
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83606Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36085.1StrainInfo: A central database for resolving microbial strain identifiers