Strain identifier
version 8.1 (current version)
General
@ref: 48210
BacDive-ID: 144529
keywords: genome sequence, Bacteria
description: Streptococcus pyogenes CCUG 25570 is a bacterium that was isolated from Human.
NCBI tax id
- NCBI tax id: 1314
- Matching level: species
doi: 10.13145/bacdive144529.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus pyogenes
- full scientific name: Streptococcus pyogenes Rosenbach 1884 (Approved Lists 1980)
@ref: 48210
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus pyogenes
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 92.586 | |
| 69480 | 100 | positive |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 99.978 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 48210
- sample type: Human
- sampling date: 1985
- geographic location: Halmstad
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Human
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptococcus pyogenes CCUG 25570 | GCA_002016575 | scaffold | ncbi | 1314 |
| 66792 | Streptococcus pyogenes strain CCUG 25570 | 1314.435 | wgs | patric | 1314 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 98.547 | no |
| gram-positive | yes | 93.61 | no |
| anaerobic | no | 97.443 | no |
| aerobic | no | 94.509 | no |
| halophile | yes | 86.45 | no |
| spore-forming | no | 96.115 | no |
| glucose-util | yes | 87.973 | no |
| thermophile | no | 99.071 | no |
| glucose-ferment | yes | 81.081 | no |
| motile | no | 96.26 | no |
External links
@ref: 48210
culture collection no.: CCUG 25570
straininfo link
- @ref: 99697
- straininfo: 57982
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 48210 | Curators of the CCUG | https://www.ccug.se/strain?id=25570 | Culture Collection University of Gothenburg (CCUG) (CCUG 25570) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 99697 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID57982.1 |