Strain identifier
version 8.1 (current version)
General
@ref: 48165
BacDive-ID: 144486
keywords: genome sequence, Bacteria
description: Capnocytophaga canimorsus CCUG 25240 is a bacterium that was isolated from Human,dog bite,46-yr-old man.
NCBI tax id
- NCBI tax id: 28188
- Matching level: species
doi: 10.13145/bacdive144486.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Capnocytophaga
- species: Capnocytophaga canimorsus
- full scientific name: Capnocytophaga canimorsus Brenner et al. 1990
@ref: 48165
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Capnocytophaga
species: Capnocytophaga canimorsus
type strain: no
Physiology and metabolism
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
48165 | - | + | - | - | - | + | + | - | + | - | - | - | - | - | - | + | - | + | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 48165
- sample type: Human,dog bite,46-yr-old man
- sampling date: 1989
- geographic location: Lund
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | #Male |
#Host | #Mammals | #Canidae (Dog) |
#Infection | #Patient |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Capnocytophaga canis CCUG 25240 | GCA_013276225 | contig | ncbi | 1848903 |
66792 | Capnocytophaga canis strain CCUG 25240 | 1848903.5 | wgs | patric | 1848903 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 86.773 | no |
gram-positive | no | 98.496 | no |
anaerobic | no | 95.034 | no |
aerobic | no | 82.518 | no |
halophile | no | 74.199 | no |
spore-forming | no | 95.57 | no |
glucose-util | yes | 82.265 | no |
flagellated | no | 94.981 | no |
thermophile | no | 98.802 | no |
glucose-ferment | no | 82.166 | no |
External links
@ref: 48165
culture collection no.: CCUG 25240
straininfo link
- @ref: 99667
- straininfo: 215381
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
48165 | Curators of the CCUG | https://www.ccug.se/strain?id=25240 | Culture Collection University of Gothenburg (CCUG) (CCUG 25240) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68382 | Automatically annotated from API zym | |||
99667 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID215381.1 |