Strain identifier

BacDive ID: 144483

Type strain: No

Species: Porphyromonas gingivalis

NCBI tax ID(s): 837 (species)

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General

@ref: 48159

BacDive-ID: 144483

keywords: Bacteria, anaerobe, mesophilic

description: Porphyromonas gingivalis CCUG 25226 is an anaerobe, mesophilic bacterium that was isolated from Human periodontic 'abscess'.

NCBI tax id

  • NCBI tax id: 837
  • Matching level: species

doi: 10.13145/bacdive144483.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Porphyromonadaceae
  • genus: Porphyromonas
  • species: Porphyromonas gingivalis
  • full scientific name: Porphyromonas gingivalis (Coykendall et al. 1980) Shah and Collins 1988

  • synonyms

    • @ref: 20215
    • synonym: Bacteroides gingivalis

@ref: 48159

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Porphyromonadaceae

genus: Porphyromonas

species: Porphyromonas gingivalis

type strain: no

Culture and growth conditions

culture temp

  • @ref: 48159
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 48159
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan+energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase+
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase+4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
48159-+------+-++-----+--

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
48159---+-----+-----+++-+----+--+-

Isolation, sampling and environmental information

isolation

  • @ref: 48159
  • sample type: Human periodontic 'abscess'
  • sampling date: 1989
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Periodontal pocket
#Host Body-Site#Other#Abscess
#Infection#Patient

External links

@ref: 48159

culture collection no.: CCUG 25226

straininfo link

  • @ref: 99664
  • straininfo: 108250

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity23551616Regulation of ICAM-1 expression in gingival fibroblasts infected with high-glucose-treated P. gingivalis.Chang LC, Kuo HC, Chang SF, Chen HJ, Lee KF, Lin TH, Huang TY, Choe CS, Lin LT, Chen CNCell Microbiol10.1111/cmi.121462013Cells, Cultured, Endocytosis, Fibroblasts/*microbiology, Gene Expression, Glucose/*metabolism, *Host-Pathogen Interactions, Humans, Intercellular Adhesion Molecule-1/*biosynthesis, MAP Kinase Signaling System, Porphyromonas gingivalis/*immunology/*physiology, Proto-Oncogene Proteins c-akt/metabolismMetabolism
Metabolism28083517Sterol Regulatory Element-Binding Protein-1c Regulates Inflammasome Activation in Gingival Fibroblasts Infected with High-Glucose-Treated Porphyromonas gingivalis.Kuo HC, Chang LC, Chen TC, Lee KC, Lee KF, Chen CN, Yu HRFront Cell Infect Microbiol10.3389/fcimb.2016.001952016Cells, Cultured, Fibroblasts/*immunology/microbiology, Gene Expression Profiling, *Gene Expression Regulation, Glucose/*metabolism, Humans, Inflammasomes/*metabolism, NLR Family, Pyrin Domain-Containing 3 Protein/*biosynthesis, Porphyromonas gingivalis/*immunology, Proto-Oncogene Proteins c-akt/metabolism, Ribosomal Protein S6 Kinases, 70-kDa/metabolism, Sterol Regulatory Element Binding Protein 1/*metabolismPathogenicity
Metabolism29150938Regulation of calcification in human aortic smooth muscle cells infected with high-glucose-treated Porphyromonas gingivalis.Chen TC, Lin CT, Chien SJ, Chang SF, Chen CNJ Cell Physiol10.1002/jcp.262682018Aorta/metabolism/microbiology/pathology, Aortic Diseases/genetics/metabolism/*microbiology/pathology, Autocrine Communication, Bacteroidaceae Infections/metabolism/*microbiology/pathology, Bone Morphogenetic Protein 4/genetics/metabolism, Cells, Cultured, Extracellular Signal-Regulated MAP Kinases/metabolism, Gene Expression Regulation, Glucose/*pharmacology, Host-Pathogen Interactions, Humans, Muscle, Smooth, Vascular/metabolism/*microbiology/pathology, Myocytes, Smooth Muscle/metabolism/*microbiology/pathology, *Osteogenesis/genetics, Porphyromonas gingivalis/*drug effects/metabolism/pathogenicity, Signal Transduction, Toll-Like Receptor 4/genetics/metabolism, Vascular Calcification/genetics/metabolism/*microbiology/pathologyPathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
48159Curators of the CCUGhttps://www.ccug.se/strain?id=25226Culture Collection University of Gothenburg (CCUG) (CCUG 25226)
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
99664Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID108250.1