Strain identifier

BacDive ID: 144481

Type strain: No

Species: Porphyromonas gingivalis

NCBI tax ID(s): 837 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 8.1 (current version)

General

@ref: 48157

BacDive-ID: 144481

keywords: Bacteria, anaerobe, mesophilic

description: Porphyromonas gingivalis CCUG 25211 is an anaerobe, mesophilic bacterium that was isolated from Human periodontal pocket.

NCBI tax id

  • NCBI tax id: 837
  • Matching level: species

doi: 10.13145/bacdive144481.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Porphyromonadaceae
  • genus: Porphyromonas
  • species: Porphyromonas gingivalis
  • full scientific name: Porphyromonas gingivalis (Coykendall et al. 1980) Shah and Collins 1988

  • synonyms

    • @ref: 20215
    • synonym: Bacteroides gingivalis

@ref: 48157

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Porphyromonadaceae

genus: Porphyromonas

species: Porphyromonas gingivalis

type strain: no

Culture and growth conditions

culture temp

  • @ref: 48157
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 48157
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan+energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase+
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase+4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    48157C14:02.914
    48157C15:00.515
    48157C16:08.816
    48157C17:00.217
    48157C18:03.918
    48157C13:0 ANTEISO0.212.701
    48157C13:0 iso4.112.612
    48157C13:1 at 12-130.212.931
    48157C14:0 ISO1.113.618
    48157C15:0 ANTEISO8.314.711
    48157C15:0 ISO30.714.621
    48157C15:0 ISO 3OH1.916.135
    48157C16:0 3OH2.317.52
    48157C16:1 ω7c0.415.819
    48157C17:0 anteiso0.216.722
    48157C17:0 iso1.316.629
    48157C17:0 iso 3OH9.818.161
    48157C17:1 ISO I/C16:0 DMA0.216.481
    48157C18:1 ω9c5.517.769
    48157C18:2 ω6,9c/C18:0 ANTE14.417.724
    48157C20:4 ω6,9,12,15c0.319.395
    48157Unidentified0.315.591
    48157Unidentified0.317.159
    48157Unidentified0.219.562
    48157unknown 13.5661.313.566
    48157unknown 16.5800.516.58
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
48157-+------+-+------+--

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
48157---------+-----+++-+----+--+-

Isolation, sampling and environmental information

isolation

  • @ref: 48157
  • sample type: Human periodontal pocket
  • sampling date: 1989
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Periodontal pocket

External links

@ref: 48157

culture collection no.: CCUG 25211

straininfo link

  • @ref: 99662
  • straininfo: 108249

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
48157Curators of the CCUGhttps://www.ccug.se/strain?id=25211Culture Collection University of Gothenburg (CCUG) (CCUG 25211)
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
99662Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID108249.1