Strain identifier
BacDive ID: 144379
Type strain: 
Species: Streptococcus agalactiae
NCBI tax ID(s): 1154808 (strain), 1311 (species)
version 9.3 (current version)
General
@ref: 48049
BacDive-ID: 144379
keywords: genome sequence, Bacteria
description: Streptococcus agalactiae CCUG 24810 is a bacterium that was isolated from Human ear,newborn.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1154808 | strain |
| 1311 | species |
doi: 10.13145/bacdive144379.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus agalactiae
- full scientific name: Streptococcus agalactiae Lehmann and Neumann 1896 (Approved Lists 1980)
synonyms
@ref synonym 20215 Streptococcus difficile 20215 Streptococcus difficilis
@ref: 48049
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus agalactiae
type strain: no
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: microaerophile
- confidence: 96.6
spore formation
- @ref: 125439
- spore formation: no
- confidence: 97.1
Isolation, sampling and environmental information
isolation
- @ref: 48049
- sample type: Human ear,newborn
- sampling date: 1989-06-11
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Child |
| #Host Body-Site | #Organ | #Ear |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptococcus agalactiae CCUG 24810 | GCA_000288695 | contig | ncbi | 1154808 |
| 66792 | Streptococcus agalactiae CCUG 24810 | 1154808.3 | wgs | patric | 1154808 |
| 66792 | Streptococcus agalactiae CCUG 24810 | 2534682322 | draft | img | 1154808 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 96.6 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 86.7 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 76.1 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 97.1 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 84.799 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 90.356 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 85.51 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 96.62 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 96.442 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 89 | no |
External links
@ref: 48049
culture collection no.: CCUG 24810
straininfo link
- @ref: 99586
- straininfo: 57443
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 48049 | Curators of the CCUG | https://www.ccug.se/strain?id=24810 | Culture Collection University of Gothenburg (CCUG) (CCUG 24810) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 99586 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID57443.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |