Archive BacDiveID:10.13145/bacdive14429.20241212.9.2

Strain identifier

BacDive ID: 14429

Type strain:

Species: Salinicoccus salsiraiae

Strain history: <- CIP, <- L. Franca, M.S. da Costa, strain RH1

NCBI tax ID(s): 365049 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 8119

BacDive-ID: 14429

DSM-Number: 19496

keywords: 16S sequence, Bacteria, mesophilic

description: Salinicoccus salsiraiae DSM 19496 is a mesophilic bacterium that was isolated from salted skate .

NCBI tax id

NCBI tax id: 365049
Matching level: species

strain history

@ref: 8119
history: <- CIP, <- L. Franca, M.S. da Costa, strain RH1

doi: 10.13145/bacdive14429.20241212.9.2

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Bacilli
order: Caryophanales
family: Staphylococcaceae
genus: Salinicoccus
species: Salinicoccus salsiraiae
full scientific name: Salinicoccus salsiraiae França et al. 2007

@ref: 8119

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Salinicoccus

species: Salinicoccus salsiraiae

full scientific name: Salinicoccus salsiraiae França et al. 2007

type strain: yes

Culture and growth conditions

culture medium

@ref: 8119
name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
growth: yes
link: https://mediadive.dsmz.de/medium/514
composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@ref: 8119
growth: positive
type: growth
temperature: 28

Physiology and metabolism

murein

@ref: 8119
murein short key: A11.02
type: A3alpha L-Lys-Gly_5-6

Isolation, sampling and environmental information

isolation

@ref: 8119
sample type: salted skate (Raja)
country: Portugal
origin.country: PRT
continent: Europe

isolation source categories

Cat1	Cat2	Cat3
#Host	#Invertebrates (Other)	#Tunicata
#Condition	#Saline

taxonmaps

@ref: 69479
File name: preview.99_14956.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_2202;97_2665;98_11319;99_14956&stattab=map
Last taxonomy: Salinicoccus
16S sequence: DQ333949
Sequence Identity:
Total samples: 2355
soil counts: 348
aquatic counts: 331
animal counts: 1510
plant counts: 166

Safety information

risk assessment

@ref: 8119
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 8119
description: Salinicoccus salsiraiae strain RH-1 16S ribosomal RNA gene, partial sequence
accession: DQ333949
length: 1505
database: nuccore
NCBI tax ID: 365049

GC content

@ref: 8119
GC-content: 46.2

External links

@ref: 8119

culture collection no.: DSM 19496, CIP 108576, LMG 22840

straininfo link

@ref: 83573
straininfo: 133655

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Metabolism	16819559	Salinicoccus salsiraiae sp. nov.: a new moderately halophilic gram-positive bacterium isolated from salted skate.	Franca L, Rainey FA, Nobre MF, da Costa MS	Extremophiles	10.1007/s00792-006-0532-1	2006	Animals, Base Composition, Carbohydrate Metabolism, Catalase/metabolism, DNA, Bacterial/analysis, Fatty Acids/analysis, Gram-Positive Asporogenous Rods/chemistry/classification/genetics/isolation & purification/metabolism, Hydrogen-Ion Concentration, Nitrates/metabolism, Nitrites/metabolism, Oxidoreductases/metabolism, Peptidoglycan/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Ribotyping, Sequence Homology, Nucleic Acid, Skates, Fish/microbiology, Sodium Chloride/*metabolism, Spain, Temperature, Vitamin K 2/analogs & derivatives/metabolism	Phylogeny
Phylogeny	17911305	Salinicoccus kunmingensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-west China.	Chen YG, Cui XL, Pukall R, Li HM, Yang YL, Xu LH, Wen ML, Peng Q, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.64783-0	2007	Aerobiosis/physiology, Bacterial Typing Techniques, Base Composition, Catalase/metabolism, Cell Wall/chemistry, China, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Glycine/analysis, Hydrogen-Ion Concentration, Locomotion/physiology, Lysine/analysis, Molecular Sequence Data, Oxidoreductases/metabolism, Phylogeny, Pigments, Biological/biosynthesis, Quinones/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Soil Microbiology, Staphylococcaceae/classification/genetics/*isolation & purification/physiology, Temperature	Metabolism

Reference

@id	authors	catalogue	doi/url	title
8119	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19496)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-19496
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
83573	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID133655.1	StrainInfo: A central database for resolving microbial strain identifiers