Strain identifier

BacDive ID: 14418

Type strain: No

Species: Macrococcus caseolyticus subsp. caseolyticus

Strain Designation: LRA 041 575

Strain history: CIP <- 1993, R. Mercier, bioMérieux, La Balme les Grottes, France: strain LRA 004 15 75, Staphylococcus cohnii cohnii <- 1975, C. Delarast, Brest, France

NCBI tax ID(s): 2233644 (subspecies)

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General

@ref: 2654

BacDive-ID: 14418

DSM-Number: 6669

keywords: genome sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, animal pathogen

description: Macrococcus caseolyticus subsp. caseolyticus LRA 041 575 is an aerobe, spore-forming, mesophilic animal pathogen of the family Staphylococcaceae.

NCBI tax id

  • NCBI tax id: 2233644
  • Matching level: subspecies

strain history

@refhistory
2654<- ATCC <- D. Androphy, LRA 041 575 <- API SA
117203CIP <- 1993, R. Mercier, bioMérieux, La Balme les Grottes, France: strain LRA 004 15 75, Staphylococcus cohnii cohnii <- 1975, C. Delarast, Brest, France

doi: 10.13145/bacdive14418.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Macrococcus
  • species: Macrococcus caseolyticus subsp. caseolyticus
  • full scientific name: Macrococcus caseolyticus subsp. caseolyticus (Schleifer et al. 1982 ex Evans 1916) Mašla?ová et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Macrococcoides caseolyticus subsp. caseolyticus

@ref: 2654

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Macrococcus

species: Macrococcus caseolyticus subsp. caseolyticus

full scientific name: Macrococcus caseolyticus subsp. caseolyticus (Schleifer et al. 1982) Mašla?ová et al. 2018

strain designation: LRA 041 575

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480positive100
117203positivecoccus-shapedno

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2654TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
37156MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
117203CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
117203CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
2654positivegrowth37mesophilic
37156positivegrowth37mesophilic
52714positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 52714
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481yes94
69480no99.834

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837516199urea-hydrolysis
6837529016arginine-hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose-fermentation
6837517306maltose+fermentation
6837517716lactose-fermentation
6837527082trehalose+fermentation
6837516899D-mannitol-fermentation
6837516634raffinose-fermentation
6837517057cellobiose-fermentation
6837517992sucrose-fermentation
6837559640N-acetylglucosamine-fermentation
6837532528turanose-fermentation
6837522599arabinose-fermentation
6837817634D-glucose-builds acid from
6837815824D-fructose+builds acid from
6837816024D-mannose+builds acid from
6837817306maltose-builds acid from
6837817716lactose+builds acid from
6837827082trehalose-builds acid from
6837816899D-mannitol+builds acid from
6837817151xylitol-builds acid from
6837828053melibiose-builds acid from
6837817632nitrate-reduction
6837816634raffinose+builds acid from
6837865327D-xylose-builds acid from
6837817992sucrose-builds acid from
68378320061methyl alpha-D-glucopyranoside-builds acid from
6837859640N-acetylglucosamine-builds acid from
6837829016arginine-hydrolysis
6837816199urea-hydrolysis

antibiotic resistance

@refmetaboliteis antibioticis sensitiveChEBIsensitivity conc.
68378lysostaphinyesyes
68375novobiocinyesyes283681.8 µg

metabolite production

  • @ref: 68378
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68378
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68378urease-3.5.1.5
68378arginine dihydrolase-3.5.3.6
68378alkaline phosphatase-3.1.3.1
68375beta-glucuronidase-3.2.1.31
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase-3.5.3.6
68375urease-3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
2654----++-+-+--+-++--++------
52714----++-+-+----------------

API STA

@refGLUFRUMNEMALLACTREMANXLTMELNITPALVPRAFXYLSACMDGNAGADHURELSTR
52714-++-+-+----++-------

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentisolation date
37156BrestFranceFRAEurope
117203BrestFranceFRAEurope1975

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
2654yes, in single cases1Risk group (German classification)
1172031Risk group (French classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Macrococcus caseolyticus strain FDAARGOS_1005
  • accession: 69966.79
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 69966

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes94no
gram-positiveyes93.654no
anaerobicno98.29yes
halophileyes85.166no
spore-formingno80.55no
glucose-utilyes87.343no
thermophileno99.757yes
flagellatedno89.482no
motileno86.795no
aerobicyes87.406yes
glucose-fermentno67.902no

External links

@ref: 2654

culture collection no.: DSM 6669, ATCC 35662, CCUG 35411, CIP 103689

straininfo link

  • @ref: 83562
  • straininfo: 41214

Reference

@idauthorscataloguedoi/urltitle
2654Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6669)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6669
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
37156Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15514
52714Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 35411)https://www.ccug.se/strain?id=35411
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68375Automatically annotated from API ID32STA
68378Automatically annotated from API STA
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83562Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41214.1StrainInfo: A central database for resolving microbial strain identifiers
117203Curators of the CIPCollection of Institut Pasteur (CIP 103689)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103689