Strain identifier
BacDive ID: 14417
Type strain: 
Species: Jeotgalicoccus nanhaiensis
Strain history: <- S-K Tang, Yunnan Inst., China
NCBI tax ID(s): 568603 (species)
version 8.1 (current version)
General
@ref: 16646
BacDive-ID: 14417
DSM-Number: 23006
keywords: 16S sequence, Bacteria, aerobe, mesophilic, coccus-shaped
description: Jeotgalicoccus nanhaiensis DSM 23006 is an aerobe, mesophilic, coccus-shaped bacterium that was isolated from tidal flat sediment.
NCBI tax id
- NCBI tax id: 568603
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16646 | <- S.-K. Tang and Y.-G. Chen, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; JSM 077023 <- Y.-G. Chen and Z.-X. Liu |
| 67771 | <- S-K Tang, Yunnan Inst., China |
doi: 10.13145/bacdive14417.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Jeotgalicoccus
- species: Jeotgalicoccus nanhaiensis
- full scientific name: Jeotgalicoccus nanhaiensis Liu et al. 2011
@ref: 16646
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Staphylococcaceae
genus: Jeotgalicoccus
species: Jeotgalicoccus nanhaiensis
full scientific name: Jeotgalicoccus nanhaiensis Liu et al. 2011
type strain: yes
Morphology
cell morphology
| @ref | cell shape | motility | gram stain |
|---|---|---|---|
| 67771 | coccus-shaped | no | |
| 67771 | positive |
Culture and growth conditions
culture medium
- @ref: 16646
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16646 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 30-35 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
- @ref: 67771
- spore formation: no
observation
- @ref: 67771
- observation: quinones: MK-7, MK-6
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 16646 | tidal flat sediment | Guangdong Province, Naozhou Island | China | CHN | Asia |
| 67771 | From intertidal sediment | Naozhou Island in the South China Sea | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Tidal flat |
| #Environmental | #Terrestrial | #Sediment |
Safety information
risk assessment
- @ref: 16646
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16646
- description: Jeotgalicoccus nanhaiensis strain JSM 077023 16S ribosomal RNA gene, partial sequence
- accession: FJ237390
- length: 1452
- database: ena
- NCBI tax ID: 568603
GC content
- @ref: 16646
- GC-content: 41.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 16646
culture collection no.: DSM 23006, KCTC 13714, JSM 077023
straininfo link
- @ref: 83561
- straininfo: 407159
literature
- topic: Phylogeny
- Pubmed-ID: 20851914
- title: Jeotgalicoccus nanhaiensis sp. nov., isolated from intertidal sediment, and emended description of the genus Jeotgalicoccus.
- authors: Liu ZX, Chen J, Tang SK, Zhang YQ, He JW, Chen QH, Li WJ, Chen YG
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.022871-0
- year: 2010
- mesh: Aerobiosis, Amino Acids/analysis, Base Composition, Catalase/metabolism, Cell Wall/chemistry, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Oxidoreductases/metabolism, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Spores, Bacterial/cytology, Staphylococcaceae/*classification/genetics/*isolation & purification/physiology, Temperature
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16646 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23006) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23006 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 83561 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407159.1 | StrainInfo: A central database for resolving microbial strain identifiers |