Strain identifier

BacDive ID: 14416

Type strain: Yes

Species: Jeotgalicoccus coquinae

Strain Designation: MK-7, MK7

Strain history: CIP <- 2019, DSMZ <- P. Kämpfer, Giessen Univ., Giessen, Germany: strain MK7

NCBI tax ID(s): 709509 (species)

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General

@ref: 16325

BacDive-ID: 14416

DSM-Number: 22419

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped

description: Jeotgalicoccus coquinae MK-7 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from coquina, a food supplement used in a duck fattening farm.

NCBI tax id

  • NCBI tax id: 709509
  • Matching level: species

strain history

@refhistory
16325<- P. Kämpfer, Univ. Giessen, Germany; MK7
118746CIP <- 2019, DSMZ <- P. Kämpfer, Giessen Univ., Giessen, Germany: strain MK7

doi: 10.13145/bacdive14416.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Jeotgalicoccus
  • species: Jeotgalicoccus coquinae
  • full scientific name: Jeotgalicoccus coquinae Martin et al. 2011

@ref: 16325

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Jeotgalicoccus

species: Jeotgalicoccus coquinae

full scientific name: Jeotgalicoccus coquinae Martin et al. 2011

strain designation: MK-7, MK7

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
29813positive1.75 µm1.75 µmcoccus-shapedno
118746positivecoccus-shapedno

colony morphology

  • @ref: 61539
  • incubation period: 1 day

pigmentation

  • @ref: 29813
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16325TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
118746CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
16325positivegrowth28mesophilic
29813positivegrowth26-42
61539positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29813aerobe
61539aerobe

spore formation

  • @ref: 29813
  • spore formation: no

halophily

  • @ref: 29813
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-14 %

observation

  • @ref: 29813
  • observation: aggregates in clumps

enzymes

@refvalueactivityec
29813catalase+1.11.1.6
29813cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dateisolation date
16325coquina, a food supplement used in a duck fattening farmGermanyDEUEurope
61539CoquinaGermanyDEUEurope2009
118746Food, CoquinaGermanyDEUEurope2009-03-01

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Livestock (Husbandry)
#Engineered#Food production#Food
#Environmental#Terrestrial#Sediment
#Host#Birds

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
163251Risk group (German classification)
1187461Risk group (French classification)

Sequence information

16S sequences

  • @ref: 16325
  • description: Jeotgalicoccus coquinae strain MK-7 16S ribosomal RNA gene, partial sequence
  • accession: GU295938
  • length: 1325
  • database: ena
  • NCBI tax ID: 709509

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Jeotgalicoccus coquinae CCM 7682GCA_014635225contigncbi709509
66792Jeotgalicoccus coquinae DSM 22419GCA_014207425scaffoldncbi709509
66792Jeotgalicoccus coquinae strain CCM 7682709509.4wgspatric709509
66792Jeotgalicoccus coquinae strain DSM 22419709509.3wgspatric709509
66792Jeotgalicoccus coquinae DSM 224192861262658draftimg709509

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno94.677yes
gram-positiveyes92.548yes
anaerobicno99.162yes
aerobicyes96.446no
halophileyes97.778no
spore-formingno89.338yes
glucose-utilyes82.495no
thermophileno99.784no
motileno89.168no
glucose-fermentno66.856no

External links

@ref: 16325

culture collection no.: DSM 22419, CCM 7682, CCUG 57956, CIP 111751

straininfo link

  • @ref: 83560
  • straininfo: 397647

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20207804Jeotgalicoccus coquinae sp. nov. and Jeotgalicoccus aerolatus sp. nov., isolated from poultry houses.Martin E, Klug K, Frischmann A, Busse HJ, Kampfer P, Jackel UInt J Syst Evol Microbiol10.1099/ijs.0.021675-02010Animals, Bacterial Typing Techniques, Cardiolipins/analysis, DNA, Bacterial/genetics, Housing, Animal, Molecular Sequence Data, Phenotype, Phosphatidylglycerols/analysis, *Phylogeny, Poultry/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Staphylococcaceae/*classification/isolation & purification, Vitamin K 2/analysisGenetics
Phylogeny20851914Jeotgalicoccus nanhaiensis sp. nov., isolated from intertidal sediment, and emended description of the genus Jeotgalicoccus.Liu ZX, Chen J, Tang SK, Zhang YQ, He JW, Chen QH, Li WJ, Chen YGInt J Syst Evol Microbiol10.1099/ijs.0.022871-02010Aerobiosis, Amino Acids/analysis, Base Composition, Catalase/metabolism, Cell Wall/chemistry, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Oxidoreductases/metabolism, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Spores, Bacterial/cytology, Staphylococcaceae/*classification/genetics/*isolation & purification/physiology, TemperatureMetabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16325Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22419)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22419
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29813Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2619028776041
61539Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 57956)https://www.ccug.se/strain?id=57956
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
83560Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397647.1StrainInfo: A central database for resolving microbial strain identifiers
118746Curators of the CIPCollection of Institut Pasteur (CIP 111751)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111751