Strain identifier
BacDive ID: 14396
Type strain:
Species: Sporolactobacillus inulinus
Strain Designation: EU
Strain history: CIP <- 1979, NCIB <- F. Kitahara <- J. Suzuki
NCBI tax ID(s): 2078 (species)
General
@ref: 8752
BacDive-ID: 14396
DSM-Number: 20348
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile, lactate production
description: Sporolactobacillus inulinus EU is a spore-forming, mesophilic, motile bacterium that produces lactate and was isolated from chicken feed.
NCBI tax id
- NCBI tax id: 2078
- Matching level: species
strain history
@ref | history |
---|---|
8752 | <- K. Kitahara, EU |
67770 | NRIC 1133 <-- K. Kitahara. |
120274 | CIP <- 1979, NCIB <- F. Kitahara <- J. Suzuki |
doi: 10.13145/bacdive14396.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Sporolactobacillaceae
- genus: Sporolactobacillus
- species: Sporolactobacillus inulinus
- full scientific name: Sporolactobacillus inulinus (Kitahara and Suzuki 1963) Kitahara and Lai 1967 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Lactobacillus inulinus
@ref: 8752
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Sporolactobacillaceae
genus: Sporolactobacillus
species: Sporolactobacillus inulinus
full scientific name: Sporolactobacillus inulinus (Kitahara and Suzuki 1963) Kitahara and Lai 1967
strain designation: EU
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 92.036 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8752 | MRS MEDIUM (DSMZ Medium 11) | yes | https://mediadive.dsmz.de/medium/11 | Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water |
34655 | MEDIUM 41- for Lactobacillus, Leuconostoc, Weissella, Pediococcus, Sporolactobacillus inulinus | yes | Distilled water make up to (1000.000 ml);Man Rogosa Sharp broth (55.000 g) | |
120274 | CIP Medium 41 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=41 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8752 | positive | growth | 30 | mesophilic |
34655 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 99.389
compound production
- @ref: 8752
- compound: D lactic acid
murein
- @ref: 8752
- murein short key: A31
- type: A1gamma m-Dpm-direct
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
8752 | chicken feed |
67770 | Chicken feed |
120274 | Other, Chicken feed |
isolation source categories
- Cat1: #Host
- Cat2: #Birds
- Cat3: #Chicken
taxonmaps
- @ref: 69479
- File name: preview.99_7489.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_414;96_3495;97_4284;98_5487;99_7489&stattab=map
- Last taxonomy: Sporolactobacillus
- 16S sequence: AB362770
- Sequence Identity:
- Total samples: 243
- soil counts: 33
- aquatic counts: 33
- animal counts: 140
- plant counts: 37
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
8752 | 1 | Risk group (German classification) |
120274 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Sporolactobacillus inulinus gene for 16S rRNA, partial sequence, strain: NRIC 1133 (= ATCC 15538, = JCM 6014) | AB362770 | 1545 | ena | 2078 |
20218 | Sporolactobacillus inulinis 16S ribosomal RNA | M58838 | 1553 | ena | 2078 |
20218 | Sporolactobacillus inulinus genes for 16S rRNA, ITS1, 23S rRNA, partial and complete sequence, strain: DSM 20348 | AB231792 | 562 | ena | 2078 |
20218 | Sporolactobacillus inulinus gene for 16S rRNA, partial sequence | AB006948 | 276 | ena | 2078 |
20218 | Sporolactobacillus inulinus gene for 16S rRNA, partial sequence | AB101595 | 1503 | ena | 2078 |
20218 | Sporolactobacillus inulinus gene for 16S rRNA, partial sequence, strain: JCM 6014 | D16283 | 1485 | ena | 2078 |
20218 | Sporolactobacillus inulinus gene for 16S ribosomal RNA, partial sequence | AB374521 | 1503 | ena | 2078 |
20218 | Sporolactobacillus inulinus gene for 16S rRNA, partial sequence, strain: NBRC 13595 | AB680455 | 1476 | ena | 2078 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Sporolactobacillus inulinus strain NBRC 13595 | 2078.4 | wgs | patric | 2078 |
67770 | Sporolactobacillus inulinus NBRC 13595 | GCA_006539285 | contig | ncbi | 2078 |
GC content
@ref | GC-content | method |
---|---|---|
8752 | 39.3 | |
67770 | 47 | |
67770 | 47.3 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 77 | no |
motile | yes | 87.339 | no |
gram-positive | yes | 92.011 | no |
anaerobic | no | 93.031 | no |
aerobic | no | 87.221 | no |
halophile | no | 50 | no |
spore-forming | yes | 92.076 | no |
glucose-util | yes | 86.557 | no |
flagellated | yes | 69.808 | no |
thermophile | no | 95.129 | yes |
glucose-ferment | no | 56.452 | no |
External links
@ref: 8752
culture collection no.: DSM 20348, ATCC 15538, JCM 6014, NRIC 1133, ATCC 14897, BCRC 14647, CCM 7124, CCUG 34015, CCUG 41661, CECT 691, CGMCC 1.3758, CGMCC 1.3844, CIP 103279, HAMBI 2162, IAM 12543, IFO 13595, KCTC 5032, LMG 11481, NBRC 13595, NCIMB 9743, NRRL B-14021, VKM B-1597
straininfo link
@ref | straininfo |
---|---|
83539 | 297026 |
83540 | 312388 |
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Pathogenicity | 17387552 | Basic characteristics of Sporolactobacillus inulinus BCRC 14647 for potential probiotic properties. | Huang HY, Huang SY, Chen PY, King VA, Lin YP, Tsen JH | Curr Microbiol | 10.1007/s00284-006-0496-5 | 2007 | Acids/pharmacology, Bacillaceae/drug effects/*physiology, Bacterial Adhesion, Bifidobacterium/physiology, Bile Acids and Salts/pharmacology, Caco-2 Cells, Humans, Hydrogen-Ion Concentration, Lactobacillaceae, Lactobacillus acidophilus/physiology, Microbial Viability, *Probiotics, Spores, Bacterial/physiology | |
Biotechnology | 19777227 | Strain improvement of Sporolactobacillus inulinus ATCC 15538 for acid tolerance and production of D-lactic acid by genome shuffling. | Zheng H, Gong J, Chen T, Chen X, Zhao X | Appl Microbiol Biotechnol | 10.1007/s00253-009-2243-x | 2009 | Bacillales/*genetics/*metabolism, Bioreactors, Biotechnology, *DNA Shuffling, DNA, Bacterial/genetics, Directed Molecular Evolution, Fermentation/genetics, Genetic Variation, *Genome, Bacterial, Glucose/metabolism, Hydrogen-Ion Concentration, Industrial Microbiology/*methods, Lactic Acid/biosynthesis, Mutagenesis, Protoplasts/physiology, Temperature, Ultraviolet Rays | Metabolism |
Cultivation | 26671214 | Enhanced production of optically pure d (-) lactic acid from nutritionally rich Borassus flabellifer sugar and whey protein hydrolysate based-fermentation medium. | Reddy Tadi SR, E V R A, Limaye AM, Sivaprakasam S | Biotechnol Appl Biochem | 10.1002/bab.1470 | 2016 | Arecaceae/*chemistry, Biomass, Bioreactors, Carbon/chemistry, Culture Media, Fermentation, Lactic Acid/*biosynthesis/chemistry, Lactobacillus, Nitrogen/chemistry, Protein Hydrolysates/chemistry, Whey Proteins/*chemistry | Biotechnology |
Phylogeny | 26843374 | Terrilactibacillus laevilacticus gen. nov., sp. nov., isolated from soil. | Prasirtsak B, Thongchul N, Tolieng V, Tanasupawat S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000954 | 2016 | Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 27515245 | Scopulibacillus daqui sp. nov., a thermophilic bacterium isolated from high temperature daqu. | Yao S, Zhai L, Xin C, Liu Y, Xu L, Zhang X, Zhao T, Zhang L, Cheng C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001417 | 2016 | Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Food Microbiology, Hot Temperature, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spores, Bacterial, Vitamin K 2/chemistry | Biotechnology |
Metabolism | 35921426 | Biological characterization of D-lactate dehydrogenase responsible for high-yield production of D-phenyllactic acid in Sporolactobacillus inulinus. | Cheng YY, Park TH, Seong H, Kim TJ, Han NS | Microb Biotechnol | 10.1111/1751-7915.14125 | 2022 | *Lactate Dehydrogenases/genetics/metabolism, *Escherichia coli/genetics/metabolism, Polyesters/metabolism | Enzymology |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8752 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20348) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20348 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
34655 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15059 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
83539 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297026.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
83540 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID312388.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120274 | Curators of the CIP | Collection of Institut Pasteur (CIP 103279) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103279 |