Strain identifier

BacDive ID: 14396

Type strain: Yes

Species: Sporolactobacillus inulinus

Strain Designation: EU

Strain history: CIP <- 1979, NCIB <- F. Kitahara <- J. Suzuki

NCBI tax ID(s): 2078 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8752

BacDive-ID: 14396

DSM-Number: 20348

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile, lactate production

description: Sporolactobacillus inulinus EU is a spore-forming, mesophilic, motile bacterium that produces lactate and was isolated from chicken feed.

NCBI tax id

  • NCBI tax id: 2078
  • Matching level: species

strain history

@refhistory
8752<- K. Kitahara, EU
67770NRIC 1133 <-- K. Kitahara.
120274CIP <- 1979, NCIB <- F. Kitahara <- J. Suzuki

doi: 10.13145/bacdive14396.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Sporolactobacillaceae
  • genus: Sporolactobacillus
  • species: Sporolactobacillus inulinus
  • full scientific name: Sporolactobacillus inulinus (Kitahara and Suzuki 1963) Kitahara and Lai 1967 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus inulinus

@ref: 8752

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Sporolactobacillaceae

genus: Sporolactobacillus

species: Sporolactobacillus inulinus

full scientific name: Sporolactobacillus inulinus (Kitahara and Suzuki 1963) Kitahara and Lai 1967

strain designation: EU

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes92.036
69480100positive

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8752MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
34655MEDIUM 41- for Lactobacillus, Leuconostoc, Weissella, Pediococcus, Sporolactobacillus inulinusyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp broth (55.000 g)
120274CIP Medium 41yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=41

culture temp

@refgrowthtypetemperaturerange
8752positivegrowth30mesophilic
34655positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: yes
  • confidence: 99.389

compound production

  • @ref: 8752
  • compound: D lactic acid

murein

  • @ref: 8752
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

observation

  • @ref: 67770
  • observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

@refsample type
8752chicken feed
67770Chicken feed
120274Other, Chicken feed

isolation source categories

  • Cat1: #Host
  • Cat2: #Birds
  • Cat3: #Chicken

taxonmaps

  • @ref: 69479
  • File name: preview.99_7489.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_414;96_3495;97_4284;98_5487;99_7489&stattab=map
  • Last taxonomy: Sporolactobacillus
  • 16S sequence: AB362770
  • Sequence Identity:
  • Total samples: 243
  • soil counts: 33
  • aquatic counts: 33
  • animal counts: 140
  • plant counts: 37

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
87521Risk group (German classification)
1202741Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Sporolactobacillus inulinus gene for 16S rRNA, partial sequence, strain: NRIC 1133 (= ATCC 15538, = JCM 6014)AB3627701545ena2078
20218Sporolactobacillus inulinis 16S ribosomal RNAM588381553ena2078
20218Sporolactobacillus inulinus genes for 16S rRNA, ITS1, 23S rRNA, partial and complete sequence, strain: DSM 20348AB231792562ena2078
20218Sporolactobacillus inulinus gene for 16S rRNA, partial sequenceAB006948276ena2078
20218Sporolactobacillus inulinus gene for 16S rRNA, partial sequenceAB1015951503ena2078
20218Sporolactobacillus inulinus gene for 16S rRNA, partial sequence, strain: JCM 6014D162831485ena2078
20218Sporolactobacillus inulinus gene for 16S ribosomal RNA, partial sequenceAB3745211503ena2078
20218Sporolactobacillus inulinus gene for 16S rRNA, partial sequence, strain: NBRC 13595AB6804551476ena2078

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sporolactobacillus inulinus strain NBRC 135952078.4wgspatric2078
67770Sporolactobacillus inulinus NBRC 13595GCA_006539285contigncbi2078

GC content

@refGC-contentmethod
875239.3
6777047
6777047.3thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes77no
motileyes87.339no
gram-positiveyes92.011no
anaerobicno93.031no
aerobicno87.221no
halophileno50no
spore-formingyes92.076no
glucose-utilyes86.557no
flagellatedyes69.808no
thermophileno95.129yes
glucose-fermentno56.452no

External links

@ref: 8752

culture collection no.: DSM 20348, ATCC 15538, JCM 6014, NRIC 1133, ATCC 14897, BCRC 14647, CCM 7124, CCUG 34015, CCUG 41661, CECT 691, CGMCC 1.3758, CGMCC 1.3844, CIP 103279, HAMBI 2162, IAM 12543, IFO 13595, KCTC 5032, LMG 11481, NBRC 13595, NCIMB 9743, NRRL B-14021, VKM B-1597

straininfo link

@refstraininfo
83539297026
83540312388

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity17387552Basic characteristics of Sporolactobacillus inulinus BCRC 14647 for potential probiotic properties.Huang HY, Huang SY, Chen PY, King VA, Lin YP, Tsen JHCurr Microbiol10.1007/s00284-006-0496-52007Acids/pharmacology, Bacillaceae/drug effects/*physiology, Bacterial Adhesion, Bifidobacterium/physiology, Bile Acids and Salts/pharmacology, Caco-2 Cells, Humans, Hydrogen-Ion Concentration, Lactobacillaceae, Lactobacillus acidophilus/physiology, Microbial Viability, *Probiotics, Spores, Bacterial/physiology
Biotechnology19777227Strain improvement of Sporolactobacillus inulinus ATCC 15538 for acid tolerance and production of D-lactic acid by genome shuffling.Zheng H, Gong J, Chen T, Chen X, Zhao XAppl Microbiol Biotechnol10.1007/s00253-009-2243-x2009Bacillales/*genetics/*metabolism, Bioreactors, Biotechnology, *DNA Shuffling, DNA, Bacterial/genetics, Directed Molecular Evolution, Fermentation/genetics, Genetic Variation, *Genome, Bacterial, Glucose/metabolism, Hydrogen-Ion Concentration, Industrial Microbiology/*methods, Lactic Acid/biosynthesis, Mutagenesis, Protoplasts/physiology, Temperature, Ultraviolet RaysMetabolism
Cultivation26671214Enhanced production of optically pure d (-) lactic acid from nutritionally rich Borassus flabellifer sugar and whey protein hydrolysate based-fermentation medium.Reddy Tadi SR, E V R A, Limaye AM, Sivaprakasam SBiotechnol Appl Biochem10.1002/bab.14702016Arecaceae/*chemistry, Biomass, Bioreactors, Carbon/chemistry, Culture Media, Fermentation, Lactic Acid/*biosynthesis/chemistry, Lactobacillus, Nitrogen/chemistry, Protein Hydrolysates/chemistry, Whey Proteins/*chemistryBiotechnology
Phylogeny26843374Terrilactibacillus laevilacticus gen. nov., sp. nov., isolated from soil.Prasirtsak B, Thongchul N, Tolieng V, Tanasupawat SInt J Syst Evol Microbiol10.1099/ijsem.0.0009542016Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny27515245Scopulibacillus daqui sp. nov., a thermophilic bacterium isolated from high temperature daqu.Yao S, Zhai L, Xin C, Liu Y, Xu L, Zhang X, Zhao T, Zhang L, Cheng CInt J Syst Evol Microbiol10.1099/ijsem.0.0014172016Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, *Food Microbiology, Hot Temperature, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spores, Bacterial, Vitamin K 2/chemistryBiotechnology
Metabolism35921426Biological characterization of D-lactate dehydrogenase responsible for high-yield production of D-phenyllactic acid in Sporolactobacillus inulinus.Cheng YY, Park TH, Seong H, Kim TJ, Han NSMicrob Biotechnol10.1111/1751-7915.141252022*Lactate Dehydrogenases/genetics/metabolism, *Escherichia coli/genetics/metabolism, Polyesters/metabolismEnzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8752Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20348)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20348
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34655Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15059
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
83539Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297026.1StrainInfo: A central database for resolving microbial strain identifiers
83540Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID312388.1StrainInfo: A central database for resolving microbial strain identifiers
120274Curators of the CIPCollection of Institut Pasteur (CIP 103279)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103279