Strain identifier
BacDive ID: 14380
Type strain: 
Species: Spiroplasma turonicum
Strain Designation: Tab4c
Strain history: <- J. K. Davis, Dept. Agronomy, Purdue Univ., West Lafayette, USA <- J. G. Tully <- R. F. Whitcomb, USDA <- C. Chastel <- F. Rodhain, CIP; Tab4c
NCBI tax ID(s): 216946 (species)
version 9.1 (current version)
General
@ref: 16440
BacDive-ID: 14380
DSM-Number: 22632
keywords: genome sequence, 16S sequence, Bacteria, microaerophile
description: Spiroplasma turonicum Tab4c is a microaerophile bacterium that was isolated from Haematopota horse fly.
NCBI tax id
- NCBI tax id: 216946
- Matching level: species
strain history
- @ref: 16440
- history: <- J. K. Davis, Dept. Agronomy, Purdue Univ., West Lafayette, USA <- J. G. Tully <- R. F. Whitcomb, USDA <- C. Chastel <- F. Rodhain, CIP; Tab4c
doi: 10.13145/bacdive14380.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/mycoplasmatota
- domain: Bacteria
- phylum: Mycoplasmatota
- class: Mollicutes
- order: Mycoplasmatales
- family: Spiroplasmataceae
- genus: Spiroplasma
- species: Spiroplasma turonicum
- full scientific name: Spiroplasma turonicum Hélias et al. 1998
@ref: 16440
domain: Bacteria
phylum: Tenericutes
class: Mollicutes
order: Entomoplasmatales
family: Spiroplasmataceae
genus: Spiroplasma
species: Spiroplasma turonicum
full scientific name: Spiroplasma turonicum Hélias et al. 1998
strain designation: Tab4c
type strain: yes
Morphology
cell morphology
- @ref: 69480
- motility: no
- confidence: 94.955
Culture and growth conditions
culture medium
- @ref: 16440
- name: SP4-Z MEDIUM (DSMZ Medium 1076b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1076b
- composition: Name: SP4-Z MEDIUM (DSMZ Medium 1076b) Composition: Agar 10.0 g/l Tryptone 10.0 g/l Bacto peptone 5.0 g/l PPLO broth 3.5 g/l Urea 2.0 g/l Glucose 1.0 g/l None 1.0 g/l Yeast extract 0.4 g/l DNA 0.2 g/l CMRL 1066 Fetal bovine serum Swine serum Distilled water
culture temp
- @ref: 16440
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 16440
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 93.903 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 16440
- sample type: Haematopota horse fly
- host species: Haematopota
- geographic location: Touraine, Indre-et-Loire, Champchevrier (46°21' N 0°25' E)
- country: France
- origin.country: FRA
- continent: Europe
- latitude: 46.35
- longitude: 0.4167
isolation source categories
- Cat1: #Host
- Cat2: #Arthropoda
- Cat3: #Insecta
taxonmaps
- @ref: 69479
- File name: preview.99_3590.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_109;96_1346;97_2242;98_2750;99_3590&stattab=map
- Last taxonomy: Spiroplasma
- 16S sequence: NR_025712
- Sequence Identity:
- Total samples: 108
- aquatic counts: 2
- animal counts: 105
- plant counts: 1
Safety information
risk assessment
- @ref: 16440
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Spiroplasma turonicum 16S ribosomal RNA gene, partial sequence | AY189310 | 1516 | nuccore | 216946 |
| 16440 | Spiroplasma turonicum strain Tab-4c 16S ribosomal RNA, partial sequence | NR_025712 | 1516 | nuccore | 216946 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Spiroplasma turonicum Tab4c | GCA_001262715 | complete | ncbi | 216946 |
| 66792 | Spiroplasma turonicum TAB4c | GCA_001513715 | complete | ncbi | 216946 |
| 66792 | Spiroplasma turonicum strain Tab4c | 216946.3 | complete | patric | 216946 |
| 66792 | Spiroplasma turonicum TAB4c | 2675903537 | complete | img | 216946 |
| 66792 | Spiroplasma turonicum Tab4c | 2651869855 | complete | img | 216946 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 69.637 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 78.874 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 96.16 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93.903 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.816 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 94.955 | no |
External links
@ref: 16440
culture collection no.: DSM 22632, ATCC 700271
straininfo link
- @ref: 83523
- straininfo: 43857
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 9731284 | Spiroplasma turonicum sp. nov. from Haematopota horse flies (Diptera: Tabanidae) in France. | Helias C, Vazeille-Falcoz M, Le Goff F, Abalain-Colloc ML, Rodhain F, Carle P, Whitcomb RF, Williamson DL, Tully JG, Bove JM, Chastel C | Int J Syst Bacteriol | 10.1099/00207713-48-2-457 | 1998 | Animals, Bacterial Proteins/analysis, DNA, Bacterial/analysis, Diptera/*microbiology, France, Spiroplasma/*classification/genetics/isolation & purification/ultrastructure | Enzymology |
| Genetics | 26586899 | Complete Genome Sequence of Spiroplasma turonicum Strain Tab4cT, a Parasite of a Horse Fly, Haematopota sp. (Diptera: Tabanidae). | Davis RE, Shao J, Zhao Y, Gasparich GE, Gaynor BJ, Donofrio N | Genome Announc | 10.1128/genomeA.01367-15 | 2015 | ||
| Genetics | 27660788 | Complete Genome Sequence of Spiroplasma turonicum Tab4cT, a Bacterium Isolated from Horse Flies (Haematopota sp.). | Lo WS, Gasparich GE, Kuo CH | Genome Announc | 10.1128/genomeA.01010-16 | 2016 | Phylogeny |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 16440 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22632) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22632 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 83523 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID43857.1 | StrainInfo: A central database for resolving microbial strain identifiers |