Strain identifier

BacDive ID: 143705

Type strain: No

Species: Nocardia otitidiscaviarum

NCBI tax ID(s): 1823 (species)

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General

@ref: 47273

BacDive-ID: 143705

keywords: genome sequence, Bacteria, spore-forming, mesophilic

description: Nocardia otitidiscaviarum CCUG 21087 is a spore-forming, mesophilic bacterium that was isolated from Bone marrow.

NCBI tax id

  • NCBI tax id: 1823
  • Matching level: species

doi: 10.13145/bacdive143705.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia otitidiscaviarum
  • full scientific name: Nocardia otitidiscaviarum corrig. Snijders 1924 (Approved Lists 1980)

@ref: 47273

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Mycobacteriales

family: Nocardiaceae

genus: Nocardia

species: Nocardia otitidiscaviarum

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.506
69480100positive

colony morphology

  • @ref: 47273
  • incubation period: 2 days

Culture and growth conditions

culture temp

  • @ref: 47273
  • growth: positive
  • type: growth
  • temperature: 25-30
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69481
  • spore formation: yes
  • confidence: 97

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea+hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379catalase-1.11.1.6
68379gelatinase+
68379urease+3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    47273C14:00.914
    47273C15:04.515
    47273C16:023.316
    47273C17:04.817
    47273C18:04.618
    47273C19:00.719
    47273C15:1 ω5c0.614.904
    47273C16:1 ω7c/C15:0 ISO 2OH12.215.85
    47273C17:0 10-methyl3.517.41
    47273C17:1 ω8c7.316.792
    47273C18:1 ω9c22.217.769
    47273C19:1 ω11c/19:1 ω9c2.918.762
    47273C20:1 ω9c0.819.77
    47273TBSA 10Me18:011.818.392
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
47273+--+--+-+++----------

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
47273-+++-+----++---++---

Isolation, sampling and environmental information

isolation

  • @ref: 47273
  • sample type: Bone marrow

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Other
  • Cat3: #Bone

Sequence information

Genome sequences

  • @ref: 66792
  • description: Nocardia otitidiscaviarum strain NEB252
  • accession: 1823.6
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 1823

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes97no
motileno92.042no
gram-positiveyes88.257no
anaerobicno99.427no
aerobicyes90.243no
halophileno91.147no
spore-formingyes87.148no
glucose-utilyes90.036no
flagellatedno97.585no
thermophileno99.451yes
glucose-fermentno89.657no

External links

@ref: 47273

culture collection no.: CCUG 21087, IMRU 738, ATCC 14630

straininfo link

  • @ref: 99031
  • straininfo: 45562

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
47273Curators of the CCUGhttps://www.ccug.se/strain?id=21087Culture Collection University of Gothenburg (CCUG) (CCUG 21087)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
99031Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID45562.1