Strain identifier
BacDive ID: 143571
Type strain:
Species: Vibrio fluvialis
Strain history: NCTC 11328 <-- J. V. Lee VL 2386 <-- J. H. McCoy 3.
NCBI tax ID(s): 676 (species)
version 8.1 (current version)
General
@ref: 47116
BacDive-ID: 143571
keywords: 16S sequence, Bacteria, mesophilic
description: Vibrio fluvialis CCUG 20267 is a mesophilic bacterium that was isolated from River water.
NCBI tax id
- NCBI tax id: 676
- Matching level: species
strain history
- @ref: 67770
- history: NCTC 11328 <-- J. V. Lee VL 2386 <-- J. H. McCoy 3.
doi: 10.13145/bacdive143571.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio fluvialis
- full scientific name: Vibrio fluvialis Lee et al. 1981
synonyms
- @ref: 20215
- synonym: Allomonas enterica
@ref: 47116
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales
family: Vibrionaceae
genus: Vibrio
species: Vibrio fluvialis
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68374 | 18257 | ornithine | - | degradation |
68374 | 29016 | arginine | - | hydrolysis |
68374 | 25094 | lysine | - | degradation |
68374 | 16199 | urea | - | hydrolysis |
68374 | 18403 | L-arabitol | - | builds acid from |
68374 | 18024 | D-galacturonic acid | + | builds acid from |
68374 | Potassium 5-ketogluconate | - | builds acid from | |
68374 | 16899 | D-mannitol | + | builds acid from |
68374 | 17306 | maltose | + | builds acid from |
68374 | 15963 | ribitol | - | builds acid from |
68374 | 18394 | palatinose | - | builds acid from |
68374 | 15792 | malonate | - | assimilation |
68374 | 27897 | tryptophan | + | energy source |
68374 | 17634 | D-glucose | + | builds acid from |
68374 | 17992 | sucrose | + | builds acid from |
68374 | 30849 | L-arabinose | + | builds acid from |
68374 | 18333 | D-arabitol | + | builds acid from |
68374 | 27082 | trehalose | + | builds acid from |
68374 | 62345 | L-rhamnose | - | builds acid from |
68374 | 17268 | myo-inositol | - | builds acid from |
68374 | 17057 | cellobiose | - | builds acid from |
68374 | 30911 | sorbitol | - | builds acid from |
metabolite production
- @ref: 68374
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 68374
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
68374 | L-aspartate arylamidase | - | 3.4.11.21 |
68374 | alpha-maltosidase | - | |
68374 | alpha-galactosidase | - | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | + | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | + | 3.2.1.21 |
68374 | lipase | - | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | - | 4.1.1.18 |
68374 | arginine dihydrolase | - | 3.5.3.6 |
68374 | ornithine decarboxylase | - | 4.1.1.17 |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
47116 | - | - | - | - | - | + | - | - | - | + | + | + | - | - | - | - | + | - | + | + | + | + | + | - | - | + | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 47116
- sample type: River water
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #River (Creek)
taxonmaps
- @ref: 69479
- File name: preview.99_418.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_312;98_347;99_418&stattab=map
- Last taxonomy: Vibrio
- 16S sequence: LC050179
- Sequence Identity:
- Total samples: 3818
- soil counts: 168
- aquatic counts: 1720
- animal counts: 1806
- plant counts: 124
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
67770 | Vibrio furnissii gene for 16S ribosomal RNA, partial cds, strain: JCM 1282 | LC050179 | 1475 | ena | 29494 |
67770 | V.fluvialis (ATCC 33812) gene for 16S ribosomal RNA (partial) | Z22990 | 199 | ena | 676 |
External links
@ref: 47116
culture collection no.: CCUG 20267, ATCC 33812, NCTC 11328, JCM 1282, CCM 3696, CGMCC 1.1611, JCM 3753, LMG 11655
straininfo link
- @ref: 98918
- straininfo: 5078
literature
- topic: Metabolism
- Pubmed-ID: 2154166
- title: Effects of respiratory activity on starvation survival of marine vibrios.
- authors: Smigielski AJ, Wallace BJ, Abrahams S, Marshall KC
- journal: Arch Microbiol
- DOI: 10.1007/BF00247817
- year: 1990
- mesh: Aerobiosis, Anaerobiosis, Carbonyl Cyanide m-Chlorophenyl Hydrazone/pharmacology, Mutation, *Oxygen Consumption, Seawater, Sodium Channels/metabolism, Vibrio/drug effects/genetics/growth & development/*metabolism, *Water Microbiology
- topic2: Pathogenicity
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
47116 | Curators of the CCUG | https://www.ccug.se/strain?id=20267 | Culture Collection University of Gothenburg (CCUG) (CCUG 20267) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68374 | Automatically annotated from API ID32E | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
98918 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID5078.1 |