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Strain identifier

BacDive ID: 143571

Type strain: No

Species: Vibrio fluvialis

Strain history: NCTC 11328 <-- J. V. Lee VL 2386 <-- J. H. McCoy 3.

NCBI tax ID(s): 676 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 47116

BacDive-ID: 143571

keywords: 16S sequence, Bacteria, mesophilic

description: Vibrio fluvialis CCUG 20267 is a mesophilic bacterium that was isolated from River water.

NCBI tax id

  • NCBI tax id: 676
  • Matching level: species

strain history: NCTC 11328 <-- J. V. Lee VL 2386 <-- J. H. McCoy 3.

doi: 10.13145/bacdive143571.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio fluvialis
  • full scientific name: Vibrio fluvialis Lee et al. 1981
  • synonyms

    • @ref: 20215
    • synonym: Allomonas enterica

@ref: 47116

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio fluvialis

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837430911sorbitol-builds acid from
6837417057cellobiose-builds acid from
6837417268myo-inositol-builds acid from
6837462345L-rhamnose-builds acid from
6837427082trehalose+builds acid from
6837418333D-arabitol+builds acid from
6837430849L-arabinose+builds acid from
6837417992sucrose+builds acid from
6837417634D-glucose+builds acid from
6837427897tryptophan+energy source
6837415792malonate-assimilation
6837418394palatinose-builds acid from
6837415963ribitol-builds acid from
6837417306maltose+builds acid from
6837416899D-mannitol+builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837418024D-galacturonic acid+builds acid from
6837418403L-arabitol-builds acid from
6837416199urea-hydrolysis
6837425094lysine-degradation
6837429016arginine-hydrolysis
6837418257ornithine-degradation

metabolite production

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase-
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
47116-----+---+++----+-+++++--+------

Isolation, sampling and environmental information

isolation

  • @ref: 47116
  • sample type: River water

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #River (Creek)

taxonmaps

  • @ref: 69479
  • File name: preview.99_418.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_312;98_347;99_418&stattab=map
  • Last taxonomy: Vibrio
  • 16S sequence: LC050179
  • Sequence Identity:
  • Total samples: 3818
  • soil counts: 168
  • aquatic counts: 1720
  • animal counts: 1806
  • plant counts: 124

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Vibrio furnissii gene for 16S ribosomal RNA, partial cds, strain: JCM 1282LC0501791475ena29494
67770V.fluvialis (ATCC 33812) gene for 16S ribosomal RNA (partial)Z22990199ena676

External links

@ref: 47116

culture collection no.: CCUG 20267, ATCC 33812, NCTC 11328, JCM 1282, CCM 3696, CGMCC 1.1611, JCM 3753, LMG 11655

literature

  • topic: Metabolism
  • Pubmed-ID: 2154166
  • title: Effects of respiratory activity on starvation survival of marine vibrios.
  • authors: Smigielski AJ, Wallace BJ, Abrahams S, Marshall KC
  • journal: Arch Microbiol
  • DOI: 10.1007/BF00247817
  • year: 1990
  • mesh: Aerobiosis, Anaerobiosis, Carbonyl Cyanide m-Chlorophenyl Hydrazone/pharmacology, Mutation, *Oxygen Consumption, Seawater, Sodium Channels/metabolism, Vibrio/drug effects/genetics/growth & development/*metabolism, *Water Microbiology
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
47116Curators of the CCUGhttps://www.ccug.se/strain?id=20267Culture Collection University of Gothenburg (CCUG) (CCUG 20267)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68374Automatically annotated from API ID32E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/