Strain identifier
version 8.1 (current version)
General
@ref: 47031
BacDive-ID: 143495
keywords: genome sequence, Bacteria, Gram-negative
description: Campylobacter jejuni CCUG 19529 is a Gram-negative bacterium that was isolated from Human.
NCBI tax id
- NCBI tax id: 197
- Matching level: species
doi: 10.13145/bacdive143495.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter jejuni
- full scientific name: Campylobacter jejuni (Jones et al. 1931) Véron and Chatelain 1973 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Vibrio jejuni
@ref: 47031
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter jejuni
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.996
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.99 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 47031 C12:0 0.3 12 47031 C14:0 13.8 14 47031 C15:0 0.4 15 47031 C16:0 38.7 16 47031 C18:0 0.3 18 47031 C13:0 ISO 2OH 0.3 13.814 47031 C14:0 3OH/C16:1 ISO I 3.7 15.485 47031 C16:1 ω5c 0.3 15.908 47031 C16:1 ω7c 5 15.819 47031 C18:1 ω7c /12t/9t 31.4 17.824 47031 C18:1 ω9c 0.3 17.769 47031 C18:2 ω6,9c/C18:0 ANTE 1 17.724 47031 C19:0 CYCLO ω8c 4.6 18.9 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
- @ref: 47031
- sample type: Human
isolation source categories
- Cat1: #Host
- Cat2: #Human
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Campylobacter jejuni subsp. jejuni NCTC12109 | GCA_900638235 | complete | ncbi | 32022 |
| 66792 | Campylobacter jejuni subsp. jejuni strain NCTC12109 | 32022.687 | complete | patric | 32022 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | yes | 65.15 | no |
| gram-positive | no | 98.909 | no |
| anaerobic | no | 89.089 | no |
| aerobic | no | 93.735 | no |
| halophile | no | 89.094 | no |
| spore-forming | no | 95.799 | no |
| thermophile | no | 88.024 | no |
| glucose-util | no | 88.347 | no |
| motile | yes | 88.317 | no |
| glucose-ferment | no | 86.202 | no |
External links
@ref: 47031
culture collection no.: CCUG 19529, NCTC 12109
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 47031 | Curators of the CCUG | https://www.ccug.se/strain?id=19529 | Culture Collection University of Gothenburg (CCUG) (CCUG 19529) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |