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Strain identifier

BacDive ID: 14340

Type strain: Yes

Species: Treponema bryantii

Strain Designation: RUS-1

Strain history: DSM 1788 <-- T. B. Stanton; RUS-1.

NCBI tax ID(s): 163 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 655

BacDive-ID: 14340

DSM-Number: 1788

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Treponema bryantii RUS-1 is an anaerobe, mesophilic bacterium that was isolated from bovine rumen fluid.

NCBI tax id

  • NCBI tax id: 163
  • Matching level: species

strain history

doi: 10.13145/bacdive14340.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/spirochaetota
  • domain: Bacteria
  • phylum: Spirochaetota
  • class: Spirochaetia
  • order: Spirochaetales
  • family: Treponemataceae
  • genus: Treponema
  • species: Treponema bryantii
  • full scientific name: Treponema bryantii Stanton and Canale-Parola 1980

@ref: 655

domain: Bacteria

phylum: Spirochaetes

class: Spirochaetia

order: Spirochaetales

family: Treponemataceae

genus: Treponema

species: Treponema bryantii

full scientific name: Treponema bryantii Stanton and Canale-Parola 1980

strain designation: RUS-1

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 96.205

Culture and growth conditions

culture medium

  • @ref: 655
  • name: TREPONEMA MEDIUM (DSMZ Medium 159)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium159.pdf

culture temp

@refgrowthtypetemperaturerange
655positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
655anaerobe
69480anaerobe100

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.29

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 99.694

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
655bovine rumen fluidMassachusetts, AmherstUSAUSANorth America
67770Rumen fluid sample obtained from a fistulated cow (Holstein breed) housed at the University of Massachusetts Dairy FacilitySouth Deerfield, MAUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Organ#Rumen

Safety information

risk assessment

  • @ref: 655
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Treponema bryantii partial 16S rRNA gene, type strain DSM 1788TFR7498951535ena163
655Treponema bryantii 16S rRNAM577371571ena163

GC content

@refGC-contentmethod
65536.0
6777035-37thermal denaturation, midpoint method (Tm)

External links

@ref: 655

culture collection no.: DSM 1788, ATCC 33254, JCM 32280

straininfo link

@refpassport
20218http://www.straininfo.net/strains/157564
20218http://www.straininfo.net/strains/157565

literature

  • topic: Phylogeny
  • Pubmed-ID: 1704792
  • title: Reclassification of Treponema hyodysenteriae and Treponema innocens in a new genus, Serpula gen. nov., as Serpula hyodysenteriae comb. nov. and Serpula innocens comb. nov.
  • authors: Stanton TB, Jensen NS, Casey TA, Tordoff LA, Dewhirst FE, Paster BJ
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-41-1-50
  • year: 1991
  • mesh: Bacterial Proteins/analysis, Base Sequence, DNA Restriction Enzymes, DNA, Bacterial/analysis/genetics, Molecular Sequence Data, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Terminology as Topic, Treponema/*classification/genetics
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
655Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1788)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1788
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)