Strain identifier
BacDive ID: 14340
Type strain: 
Species: Treponema bryantii
Strain Designation: RUS-1
Strain history: DSM 1788 <-- T. B. Stanton; RUS-1.
NCBI tax ID(s): 163 (species)
version 7.1 (current version)
General
@ref: 655
BacDive-ID: 14340
DSM-Number: 1788
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Treponema bryantii RUS-1 is an anaerobe, mesophilic bacterium that was isolated from bovine rumen fluid.
NCBI tax id
- NCBI tax id: 163
- Matching level: species
strain history
doi: 10.13145/bacdive14340.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Spirochaetales
- family: Treponemataceae
- genus: Treponema
- species: Treponema bryantii
- full scientific name: Treponema bryantii Stanton and Canale-Parola 1980
@ref: 655
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Spirochaetales
family: Treponemataceae
genus: Treponema
species: Treponema bryantii
full scientific name: Treponema bryantii Stanton and Canale-Parola 1980
strain designation: RUS-1
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 96.205
Culture and growth conditions
culture medium
- @ref: 655
- name: TREPONEMA MEDIUM (DSMZ Medium 159)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium159.pdf
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 655 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 655 | anaerobe | |
| 69480 | anaerobe | 100 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 98.29
halophily
- @ref: 69480
- halophily level: non-halophilic
- confidence: 99.694
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 655 | bovine rumen fluid | Massachusetts, Amherst | USA | USA | North America |
| 67770 | Rumen fluid sample obtained from a fistulated cow (Holstein breed) housed at the University of Massachusetts Dairy Facility | South Deerfield, MA | USA | USA | North America |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Bovinae (Cow, Cattle) |
| #Host Body-Site | #Organ | #Rumen |
Safety information
risk assessment
- @ref: 655
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Treponema bryantii partial 16S rRNA gene, type strain DSM 1788T | FR749895 | 1535 | ena | 163 |
| 655 | Treponema bryantii 16S rRNA | M57737 | 1571 | ena | 163 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 655 | 36.0 | |
| 67770 | 35-37 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 655
culture collection no.: DSM 1788, ATCC 33254, JCM 32280
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/157564 |
| 20218 | http://www.straininfo.net/strains/157565 |
literature
- topic: Phylogeny
- Pubmed-ID: 1704792
- title: Reclassification of Treponema hyodysenteriae and Treponema innocens in a new genus, Serpula gen. nov., as Serpula hyodysenteriae comb. nov. and Serpula innocens comb. nov.
- authors: Stanton TB, Jensen NS, Casey TA, Tordoff LA, Dewhirst FE, Paster BJ
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-41-1-50
- year: 1991
- mesh: Bacterial Proteins/analysis, Base Sequence, DNA Restriction Enzymes, DNA, Bacterial/analysis/genetics, Molecular Sequence Data, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Terminology as Topic, Treponema/*classification/genetics
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 655 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1788) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1788 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |