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Strain identifier

BacDive ID: 143369

Type strain: No

Species: Pseudomonas fragi

NCBI tax ID(s): 296 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 46878

BacDive-ID: 143369

keywords: Bacteria

description: Pseudomonas fragi CCUG 18759 is a bacterium that was isolated from Porc meat.

NCBI tax id

  • NCBI tax id: 296
  • Matching level: species

doi: 10.13145/bacdive143369.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas fragi
  • full scientific name: Pseudomonas fragi (Eichholz 1902) Gruber 1905 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacterium fragi

@ref: 46878

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas fragi

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    46878C12:03.812
    46878C14:00.614
    46878C15:00.515
    46878C16:029.516
    46878C17:00.417
    46878C18:00.618
    46878C10:0 3OH4.411.423
    46878C12:0 2OH4.313.178
    46878C12:0 3OH413.455
    46878C13:0 ISO 2OH0.213.814
    46878C16:1 ω7c19.615.819
    46878C17:0 CYCLO22.316.888
    46878C18:1 ω7c /12t/9t7.417.824
    46878C18:1 ω9c0.417.769
    46878C18:2 ω6,9c/C18:0 ANTE0.317.724
    46878C19:0 CYCLO ω8c1.818.9
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
46878-+++-++-+-++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
46878---+--+-++++--++-++-+

Isolation, sampling and environmental information

isolation

  • @ref: 46878
  • sample type: Porc meat
  • sampling date: 1984
  • geographic location: Kävlinge
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Meat
#Host#Birds#Chicken

External links

@ref: 46878

culture collection no.: CCUG 18759

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
46878Curators of the CCUGhttps://www.ccug.se/strain?id=18759Culture Collection University of Gothenburg (CCUG) (CCUG 18759)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym