Strain identifier

BacDive ID: 143369

Type strain: No

Species: Pseudomonas fragi

NCBI tax ID(s): 296 (species)

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General

@ref: 46878

BacDive-ID: 143369

keywords: Bacteria

description: Pseudomonas fragi CCUG 18759 is a bacterium that was isolated from Porc meat.

NCBI tax id

  • NCBI tax id: 296
  • Matching level: species

doi: 10.13145/bacdive143369.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas fragi
  • full scientific name: Pseudomonas fragi (Eichholz 1902) Gruber 1905 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium fragi

@ref: 46878

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas fragi

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    46878C12:03.812
    46878C14:00.614
    46878C15:00.515
    46878C16:029.516
    46878C17:00.417
    46878C18:00.618
    46878C10:0 3OH4.411.423
    46878C12:0 2OH4.313.178
    46878C12:0 3OH413.455
    46878C13:0 ISO 2OH0.213.814
    46878C16:1 ω7c19.615.819
    46878C17:0 CYCLO22.316.888
    46878C18:1 ω7c /12t/9t7.417.824
    46878C18:1 ω9c0.417.769
    46878C18:2 ω6,9c/C18:0 ANTE0.317.724
    46878C19:0 CYCLO ω8c1.818.9
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
46878-+++-++-+-++---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
46878---+--+-++++--++-++-+

Isolation, sampling and environmental information

isolation

  • @ref: 46878
  • sample type: Porc meat
  • sampling date: 1984
  • geographic location: Kävlinge
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Meat
#Host#Birds#Chicken

External links

@ref: 46878

culture collection no.: CCUG 18759

straininfo link

  • @ref: 98743
  • straininfo: 215357

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
46878Curators of the CCUGhttps://www.ccug.se/strain?id=18759Culture Collection University of Gothenburg (CCUG) (CCUG 18759)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
98743Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID215357.1