Strain identifier
BacDive ID: 14328
Type strain: 
Species: Spirochaeta halophila
Strain Designation: RS1
Strain history: <- ATCC <- E. P. Greenberg, RS1
NCBI tax ID(s): 149 (species)
General
@ref: 3962
BacDive-ID: 14328
DSM-Number: 10522
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Spirochaeta halophila RS1 is an anaerobe, mesophilic bacterium that was isolated from black mud of a solar lake.
NCBI tax id
- NCBI tax id: 149
- Matching level: species
strain history
- @ref: 3962
- history: <- ATCC <- E. P. Greenberg, RS1
doi: 10.13145/bacdive14328.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Spirochaetales
- family: Spirochaetaceae
- genus: Spirochaeta
- species: Spirochaeta halophila
- full scientific name: Spirochaeta halophila Greenberg and Canale-Parola 1977 (Approved Lists 1980)
@ref: 3962
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Spirochaetales
family: Spirochaetaceae
genus: Spirochaeta
species: Spirochaeta halophila
full scientific name: Spirochaeta halophila Greenberg and Canale-Parola 1977
strain designation: RS1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 3962
- name: INORGANIC SALTS-MALTOSE MEDIUM (DSMZ Medium 754)
- growth: yes
- link: https://mediadive.dsmz.de/medium/754
- composition: Name: INORGANIC SALTS-MALTOSE MEDIUM (DSMZ Medium 754) Composition: MgSO4 x 7 H2O 48.3826 g/l NaCl 42.924 g/l Maltose 5.0 g/l Yeast extract 4.0 g/l Peptone 2.0 g/l CaCl2 x 2 H2O 1.2642 g/l Distilled water
culture temp
- @ref: 3962
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 3962
- oxygen tolerance: anaerobe
compound production
- @ref: 3962
- compound: carotenoids
Isolation, sampling and environmental information
isolation
- @ref: 3962
- sample type: black mud of a solar lake
- geographic location: Gulf of Agaba
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Condition | #Saline |
Safety information
risk assessment
- @ref: 3962
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Spirochaeta halophila strain RS1 16S ribosomal RNA gene, complete sequence
- accession: M88722
- length: 1564
- database: ena
- NCBI tax ID: 149
External links
@ref: 3962
culture collection no.: DSM 10522, ATCC 29478
straininfo link
- @ref: 83476
- straininfo: 39550
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3962 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10522) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10522 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 83476 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID39550.1 | StrainInfo: A central database for resolving microbial strain identifiers |