Strain identifier
BacDive ID: 14320
Type strain: 
Species: Treponema stenostreptum
Strain Designation: Z1
Strain history: DSM 2028 <-- E. Canal-Parola strain Z1.
NCBI tax ID(s): 152 (species)
version 8.1 (current version)
General
@ref: 961
BacDive-ID: 14320
DSM-Number: 2028
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Treponema stenostreptum Z1 is an anaerobe, mesophilic bacterium that was isolated from black mud, fresh water pond.
NCBI tax id
- NCBI tax id: 152
- Matching level: species
strain history
| @ref | history |
|---|---|
| 961 | <- E. Canale-Parola, University of Massachusetts, Department of Microbiology, USA; Z1 |
| 67770 | DSM 2028 <-- E. Canal-Parola strain Z1. |
doi: 10.13145/bacdive14320.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Spirochaetales
- family: Treponemataceae
- genus: Treponema
- species: Treponema stenostreptum
- full scientific name: Treponema stenostreptum corrig. (Zuelzer 1912) Abt et al. 2013
synonyms
@ref synonym 20215 Zuelzera stenostrepta 20215 Spirochaeta stenostrepta 20215 Spirochaeta stenostreptum 20215 Treponema stenostrepta
@ref: 961
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Spirochaetales
family: Treponemataceae
genus: Treponema
species: Treponema stenostreptum
full scientific name: Treponema stenostreptum (Zuelzer 1912) Abt et al. 2013
strain designation: Z1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 961
- name: ZUELZERA MEDIUM (DSMZ Medium 174)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium174.pdf
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 961 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 961
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 961 | black mud, fresh water pond | Massachusetts, Amherst | USA | USA | North America |
| 67770 | Mud of a fresh-water pond |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Environmental | #Aquatic | #Pond (small) |
taxonmaps
- @ref: 69479
- File name: preview.99_117931.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15834;96_14331;97_59913;98_79602;99_117931&stattab=map
- Last taxonomy: Treponema stenostreptum subclade
- 16S sequence: FR733664
- Sequence Identity:
- Total samples: 2703
- soil counts: 972
- aquatic counts: 943
- animal counts: 62
- plant counts: 726
Safety information
risk assessment
- @ref: 961
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Treponema succinifaciens DSM 2489 strain 6091 16S ribosomal RNA gene, partial sequence | M57738 | 1510 | ena | 869209 |
| 20218 | Spirochaeta stenostrepta gene for 16S ribosomal RNA, partial sequence, strain: JCM 16534 | AB541984 | 1502 | ena | 152 |
| 961 | Spirochaeta stenostrepta partial 16S rRNA gene, type strain DSM2028T | FR733664 | 1528 | ena | 152 |
External links
@ref: 961
culture collection no.: DSM 2028, ATCC 25083, JCM 16534
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 961 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2028) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2028 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |