Strain identifier
BacDive ID: 1432
Type strain:
Species: Parageobacillus thermoglucosidasius
Strain Designation: PB94A
Strain history: <- A.G. Valladares Juárez, Techn. Univ. Hamburg-Harburg <- J. Dreyer; PB94A
NCBI tax ID(s): 1426 (species)
General
@ref: 15845
BacDive-ID: 1432
DSM-Number: 21625
keywords: genome sequence, Bacteria, thermophilic
description: Parageobacillus thermoglucosidasius PB94A is a thermophilic bacterium that was isolated from flax plants.
NCBI tax id
- NCBI tax id: 1426
- Matching level: species
strain history
- @ref: 15845
- history: <- A.G. Valladares Juárez, Techn. Univ. Hamburg-Harburg <- J. Dreyer; PB94A
doi: 10.13145/bacdive1432.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Parageobacillus
- species: Parageobacillus thermoglucosidasius
- full scientific name: Parageobacillus thermoglucosidasius (Suzuki 1984) Aliyu et al. 2019
synonyms
@ref synonym 20215 Parageobacillus thermoglucosidasius 20215 Bacillus thermoglucosidasius 20215 Geobacillus thermoglucosidans 20215 Geobacillus thermoglucosidasius
@ref: 15845
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Parageobacillus
species: Parageobacillus thermoglucosidasius
full scientific name: Parageobacillus thermoglucosidasius (Suzuki 1984) Aliyu et al. 2019
strain designation: PB94A
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
15845 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
15845 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1; with strain-specific modifications) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Manganese Sulfate 0.01 g/l Distilled water |
culture temp
- @ref: 15845
- growth: positive
- type: growth
- temperature: 55
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 15845
- sample type: flax plants
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
Safety information
risk assessment
- @ref: 15845
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Parageobacillus thermoglucosidasius DSM 21625 | GCA_014218665 | contig | ncbi | 1426 |
66792 | Parageobacillus thermoglucosidasius strain DSM 21625 | 1426.118 | wgs | patric | 1426 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 87.665 | no |
gram-positive | yes | 74.541 | no |
anaerobic | no | 96.865 | no |
halophile | no | 92.976 | no |
spore-forming | yes | 96.581 | no |
thermophile | yes | 99.377 | yes |
glucose-util | yes | 92.288 | no |
aerobic | yes | 75.937 | no |
flagellated | yes | 82.328 | no |
glucose-ferment | no | 90.207 | no |
External links
@ref: 15845
culture collection no.: DSM 21625
straininfo link
- @ref: 71082
- straininfo: 399492
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 19333594 | Characterisation of a new thermoalkaliphilic bacterium for the production of high-quality hemp fibres, Geobacillus thermoglucosidasius strain PB94A. | Valladares Juarez AG, Dreyer J, Gopel PK, Koschke N, Frank D, Markl H, Muller R | Appl Microbiol Biotechnol | 10.1007/s00253-009-1969-9 | 2009 | Alkalies/*metabolism, Bacteria/chemistry/genetics/*isolation & purification/*metabolism, Bacterial Proteins/metabolism, Cannabis/*chemistry/metabolism, Hot Temperature, Molecular Sequence Data, Pectins/*metabolism, Polygalacturonase/metabolism | Stress |
Biotechnology | 21487698 | Development of a biotechnological process for the production of high quality linen fibers. | Valladares Juarez AG, Rost G, Heitmann U, Heger E, Muller R | Bioprocess Biosyst Eng | 10.1007/s00449-011-0542-y | 2011 | Biotechnology/*methods, Flax/*chemistry, Geobacillus/*enzymology/isolation & purification, Pectins/biosynthesis/*chemistry, Polygalacturonase/chemistry/metabolism, Polysaccharide-Lyases/biosynthesis/*chemistry, Textiles | Enzymology |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
15845 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21625) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21625 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
71082 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID399492.1 | StrainInfo: A central database for resolving microbial strain identifiers |