Strain identifier
BacDive ID: 14317
Type strain: 
Species: Spirochaeta aurantia
Strain Designation: J1
Strain history: <- E. Canale-Parola, University of Massachusetts, Department of Microbiology, USA; J1 <- J. A. Breznak and E. Canale-Parola {1968}
NCBI tax ID(s): 147 (species)
General
@ref: 921
BacDive-ID: 14317
DSM-Number: 1902
keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic
description: Spirochaeta aurantia J1 is a facultative anaerobe, mesophilic bacterium that was isolated from fresh water mud.
NCBI tax id
- NCBI tax id: 147
- Matching level: species
strain history
- @ref: 921
- history: <- E. Canale-Parola, University of Massachusetts, Department of Microbiology, USA; J1 <- J. A. Breznak and E. Canale-Parola {1968}
doi: 10.13145/bacdive14317.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Spirochaetales
- family: Spirochaetaceae
- genus: Spirochaeta
- species: Spirochaeta aurantia
- full scientific name: Spirochaeta aurantia (ex Vinzent 1926) Canale-Parola 1980
@ref: 921
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Spirochaetales
family: Spirochaetaceae
genus: Spirochaeta
species: Spirochaeta aurantia
full scientific name: Spirochaeta aurantia (ex Vinzent 1926) Canale-Parola 1980
strain designation: J1
type strain: yes
Culture and growth conditions
culture medium
- @ref: 921
- name: TERETINEMA MEDIUM (DSMZ Medium 169)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium169.pdf
culture temp
- @ref: 921
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 921
- oxygen tolerance: facultative anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 921
- sample type: fresh water mud
- geographic location: Massachusetts, Amherst
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Terrestrial | #Mud (Sludge) |
taxonmaps
- @ref: 69479
- File name: preview.99_126932.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2127;96_32986;97_41797;98_54577;99_126932&stattab=map
- Last taxonomy: Spirochaeta aurantia subclade
- 16S sequence: NR_104782
- Sequence Identity:
- Total samples: 4582
- soil counts: 1220
- aquatic counts: 2374
- animal counts: 528
- plant counts: 460
Safety information
risk assessment
- @ref: 921
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Spirochaeta aurantia 16S rRNA | M57740 | 1561 | ena | 143778 |
| 20218 | Spirochaeta aurantia subsp. aurantia partial 16S rRNA gene, type strain DSM 1902T | FR749896 | 1528 | ena | 143778 |
| 921 | Spirochaeta aurantia subsp. aurantia strain J1 16S ribosomal RNA, partial sequence | NR_104782 | 1528 | nuccore | 143778 |
External links
@ref: 921
culture collection no.: DSM 1902, ATCC 25082
straininfo link
- @ref: 83467
- straininfo: 38344
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 921 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1902) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1902 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 83467 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38344.1 | StrainInfo: A central database for resolving microbial strain identifiers |