Strain identifier
BacDive ID: 14308
Type strain: 
Species: Borrelia turcica
Strain Designation: IST7
Strain history: <- T. Masuzawa; IST7
NCBI tax ID(s): 229155 (species)
version 8.1 (current version)
General
@ref: 6307
BacDive-ID: 14308
DSM-Number: 16138
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, motile, rod-shaped
description: Borrelia turcica IST7 is a microaerophile, mesophilic, motile bacterium that was isolated from Hyalomma aegyptium .
NCBI tax id
- NCBI tax id: 229155
- Matching level: species
strain history
- @ref: 6307
- history: <- T. Masuzawa; IST7
doi: 10.13145/bacdive14308.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Spirochaetales
- family: Borreliaceae
- genus: Borrelia
- species: Borrelia turcica
- full scientific name: Borrelia turcica Güner et al. 2004
@ref: 6307
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Spirochaetales
family: Borreliaceae
genus: Borrelia
species: Borrelia turcica
full scientific name: Borrelia turcica Güner et al. 2004
strain designation: IST7
type strain: yes
Morphology
cell morphology
- @ref: 30191
- cell length: 18 µm
- cell width: 0.24 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
- @ref: 6307
- name: BSK-MEDIUM (DSMZ Medium 403)
- growth: yes
- link: https://mediadive.dsmz.de/medium/403
- composition: Name: BSK-MEDIUM (DSMZ Medium 403) Composition: Bovine serum albumin 35.0245 g/l Gelatine 9.79706 g/l HEPES buffer 4.19874 g/l Proteose peptone no. 2 3.49895 g/l Glucose 2.09937 g/l Proteose yeastolate 0.69979 g/l Tryptone peptone 0.69979 g/l Na-pyruvate 0.559832 g/l Sodium citrate 0.489853 g/l N-Acetylglucosamine 0.279916 g/l MgCl2 x 6 H2O 0.209937 g/l L-Glutamine 0.069979 g/l Double distilled water CMRL 1066 Rabbit serum
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6307 | positive | growth | 35 | mesophilic |
| 30191 | positive | growth | 34-39 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 6307
- oxygen tolerance: microaerophile
Isolation, sampling and environmental information
isolation
- @ref: 6307
- sample type: Hyalomma aegyptium (Hard tick)
- country: Turkey
- origin.country: TUR
isolation source categories
- Cat1: #Host
- Cat2: #Arthropoda
- Cat3: #Tick
Safety information
risk assessment
- @ref: 6307
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6307
- description: Borrelia turcica gene for 16S rRNA, partial sequence, strain: IST7
- accession: AB111849
- length: 1270
- database: ena
- NCBI tax ID: 1104446
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Borrelia turcica IST7 | GCA_003606285 | complete | ncbi | 1104446 |
| 66792 | Borrelia turcica IST7 | 1104446.3 | complete | patric | 1104446 |
| 66792 | Borrelia turcica IST7 | 2840707444 | complete | img | 1104446 |
GC content
- @ref: 6307
- GC-content: 30
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 86.433 | no |
| flagellated | no | 89.468 | no |
| gram-positive | no | 93.965 | no |
| anaerobic | no | 93.094 | yes |
| aerobic | no | 97.246 | no |
| halophile | yes | 62.538 | no |
| spore-forming | no | 97.505 | no |
| thermophile | no | 84.119 | yes |
| glucose-util | yes | 80.433 | no |
| glucose-ferment | yes | 69.456 | no |
External links
@ref: 6307
culture collection no.: DSM 16138, JCM 11958
straininfo link
- @ref: 83461
- straininfo: 134278
literature
- topic: Phylogeny
- Pubmed-ID: 15388724
- title: Borrelia turcica sp. nov., isolated from the hard tick Hyalomma aegyptium in Turkey.
- authors: Guner ES, Watanabe M, Hashimoto N, Kadosaka T, Kawamura Y, Ezaki T, Kawabata H, Imai Y, Kaneda K, Masuzawa T
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.03050-0
- year: 2004
- mesh: Animals, Base Composition, Blotting, Southwestern, Borrelia/*classification/genetics/*isolation & purification/ultrastructure, DNA Fingerprinting, DNA, Bacterial/analysis/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Electrophoresis, Gel, Pulsed-Field, Flagella, Genes, rRNA, Ixodidae/*microbiology, Microscopy, Electron, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plasmids/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tick Infestations/veterinary, Turkey, Turtles/parasitology
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 6307 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16138) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16138 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30191 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26537 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 83461 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID134278.1 | StrainInfo: A central database for resolving microbial strain identifiers |