Strain identifier
BacDive ID: 14305
Type strain: 
Species: Borrelia afzelii
Strain Designation: VS 461
Strain history: <- CIP <- G. Baranton <- Péter
NCBI tax ID(s): 29518 (species)
version 8.1 (current version)
General
@ref: 3953
BacDive-ID: 14305
DSM-Number: 10508
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic
description: Borrelia afzelii VS 461 is a microaerophile, mesophilic bacterium that was isolated from Ixodes ricinus.
NCBI tax id
- NCBI tax id: 29518
- Matching level: species
strain history
- @ref: 3953
- history: <- CIP <- G. Baranton <- Péter
doi: 10.13145/bacdive14305.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Spirochaetales
- family: Borreliaceae
- genus: Borrelia
- species: Borrelia afzelii
- full scientific name: Borrelia afzelii Canica et al. 1994
synonyms
- @ref: 20215
- synonym: Borreliella afzelii
@ref: 3953
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Spirochaetales
family: Borreliaceae
genus: Borrelia
species: Borrelia afzelii
full scientific name: Borrelia afzelii Canica et al. 1994
strain designation: VS 461
type strain: yes
Culture and growth conditions
culture medium
- @ref: 3953
- name: BSK-MEDIUM (DSMZ Medium 403)
- growth: yes
- link: https://mediadive.dsmz.de/medium/403
- composition: Name: BSK-MEDIUM (DSMZ Medium 403) Composition: Bovine serum albumin 35.0245 g/l Gelatine 9.79706 g/l HEPES buffer 4.19874 g/l Proteose peptone no. 2 3.49895 g/l Glucose 2.09937 g/l Proteose yeastolate 0.69979 g/l Tryptone peptone 0.69979 g/l Na-pyruvate 0.559832 g/l Sodium citrate 0.489853 g/l N-Acetylglucosamine 0.279916 g/l MgCl2 x 6 H2O 0.209937 g/l L-Glutamine 0.069979 g/l Double distilled water CMRL 1066 Rabbit serum
culture temp
- @ref: 3953
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 3953
- oxygen tolerance: microaerophile
Isolation, sampling and environmental information
isolation
- @ref: 3953
- sample type: Ixodes ricinus
- host species: Ixodes ricinus
- geographic location: Sion
- country: Switzerland
- origin.country: CHE
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Arthropoda
- Cat3: #Tick
taxonmaps
- @ref: 69479
- File name: preview.99_2583.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15870;96_290;97_320;98_355;99_2583&stattab=map
- Last taxonomy: Borreliella
- 16S sequence: FR733687
- Sequence Identity:
- Total samples: 254
- soil counts: 26
- aquatic counts: 31
- animal counts: 197
Safety information
risk assessment
- @ref: 3953
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Borrelia afzelii strain BO23 16S ribosomal RNA (rrs) gene, partial sequence | DQ111061 | 554 | ena | 29518 |
| 20218 | Borrelia afzelii strain BO23 16S ribosomal RNA gene, partial sequence | KF607014 | 391 | ena | 29518 |
| 20218 | Borrelia afzelii strain VS461 16S ribosomal RNA gene, partial sequence | AY342034 | 1013 | ena | 29518 |
| 20218 | Borrelia afzelii 16S riboosomal RNA ribosomal RNA gene, partial sequence | U78151 | 781 | ena | 29518 |
| 3953 | Borrelia afzelii partial 16S rRNA gene, type strain DSM10508T | FR733687 | 1524 | ena | 29518 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Borreliella afzelii DSM 10508 | GCA_014202295 | scaffold | ncbi | 29518 |
| 66792 | Borreliella afzelii strain DSM 10508 | 29518.17 | wgs | patric | 29518 |
| 66792 | Borrelia afzelii DSM 10508 | 2861437327 | draft | img | 29518 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 88.252 | no |
| gram-positive | no | 93.297 | no |
| anaerobic | no | 92.603 | yes |
| aerobic | no | 97.37 | yes |
| halophile | yes | 63.774 | no |
| spore-forming | no | 97.43 | no |
| glucose-util | yes | 79.995 | no |
| thermophile | no | 87.473 | yes |
| motile | yes | 88.202 | no |
| glucose-ferment | yes | 68.363 | no |
External links
@ref: 3953
culture collection no.: DSM 10508, ATCC 51567, CIP 103469
straininfo link
- @ref: 83458
- straininfo: 93003
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3953 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10508) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10508 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 83458 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID93003.1 | StrainInfo: A central database for resolving microbial strain identifiers |