Strain identifier

BacDive ID: 143047

Type strain: No

Species: Parabacteroides merdae

NCBI tax ID(s): 46503 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 8.1 (current version)

General

@ref: 46503

BacDive-ID: 143047

keywords: Bacteria, anaerobe, mesophilic

description: Parabacteroides merdae CCUG 16520 is an anaerobe, mesophilic bacterium that was isolated from Human infection.

NCBI tax id

  • NCBI tax id: 46503
  • Matching level: species

doi: 10.13145/bacdive143047.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Tannerellaceae
  • genus: Parabacteroides
  • species: Parabacteroides merdae
  • full scientific name: Parabacteroides merdae (Johnson et al. 1986) Sakamoto and Benno 2006

  • synonyms

    • @ref: 20215
    • synonym: Bacteroides merdae

@ref: 46503

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Tannerellaceae

genus: Parabacteroides

species: Parabacteroides merdae

type strain: no

Culture and growth conditions

culture temp

  • @ref: 46503
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 46503
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose+fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase+
68380glutamyl-glutamate arylamidase+
68380histidine arylamidase+
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase+3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    46503C15:011.315
    46503C16:01.416
    46503C17:00.417
    46503C18:00.418
    46503C13:0 ANTEISO0.312.701
    46503C13:0 iso0.312.612
    46503C15:0 ANTEISO41.814.711
    46503C15:0 ISO614.621
    46503C15:1 ω6c0.714.856
    46503C15:1 ω8c0.414.792
    46503C16:0 3OH0.817.52
    46503C16:1 ω7c1.415.819
    46503C17:0 2OH2.518.249
    46503C17:0 3OH2.618.535
    46503C17:0 iso 3OH13.618.161
    46503C17:1 ω6c0.616.862
    46503C17:1 ω8c316.792
    46503C17:1 ω9c ANTEISO1.216.525
    46503C17:1 ω9c ISO0.716.416
    46503C18:1 ω9c2.717.769
    46503C18:2 ω6,9c/C18:0 ANTE3.917.724
    46503Unidentified0.713.659
    46503Unidentified0.313.948
    46503unknown 13.5663.113.566
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
46503-+---+------++-+++--

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
46503--++-+++-+++----++-+++-++++++

Isolation, sampling and environmental information

isolation

  • @ref: 46503
  • sample type: Human infection
  • geographic location: Göteborg
  • country: Sweden
  • origin.country: SWE
  • continent: Europe

isolation source categories

Cat1Cat2
#Host#Human
#Infection#Disease
#Infection#Patient

External links

@ref: 46503

culture collection no.: CCUG 16520

straininfo link

  • @ref: 98457
  • straininfo: 51866

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
46503Curators of the CCUGhttps://www.ccug.se/strain?id=16520Culture Collection University of Gothenburg (CCUG) (CCUG 16520)
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
98457Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID51866.1