Strain identifier

BacDive ID: 14290

Type strain: Yes

Species: Zymomonas mobilis subsp. francensis

Strain Designation: AN0101

Strain history: CIP <- 2005, M. Coton, ADRIA Normandie, Villers Bocage, France: strain AN0101

NCBI tax ID(s): 325472 (subspecies)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 7602

BacDive-ID: 14290

DSM-Number: 18599

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, rod-shaped

description: Zymomonas mobilis subsp. francensis AN0101 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from "framboise" spoiled ciders.

NCBI tax id

  • NCBI tax id: 325472
  • Matching level: subspecies

strain history

@refhistory
7602<- CIP <- M. Coton, ADRIA Normandie, France; AN0101
339892005, M. Coton, ADRIA Normandie, Villers Bocage, France: strain AN0101
120990CIP <- 2005, M. Coton, ADRIA Normandie, Villers Bocage, France: strain AN0101

doi: 10.13145/bacdive14290.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Zymomonadaceae
  • genus: Zymomonas
  • species: Zymomonas mobilis subsp. francensis
  • full scientific name: Zymomonas mobilis subsp. francensis Coton et al. 2006

@ref: 7602

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Zymomonadaceae

genus: Zymomonas

species: Zymomonas mobilis subsp. francensis

full scientific name: Zymomonas mobilis subsp. francensis Coton et al. 2006

strain designation: AN0101

type strain: yes

Morphology

cell morphology

  • @ref: 120990
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 120990

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7602ZYMOMONAS MEDIUM (DSMZ Medium 10)yeshttps://mediadive.dsmz.de/medium/10Name: ZYMOMONAS MEDIUM (DSMZ Medium 10) Composition: Glucose 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Bacto peptone 10.0 g/l Distilled water
33989MEDIUM 77 - for Zymomonas mobilisyesDistilled water make up to (1000.000 ml);Glucose (20.000 g);Yeast extract (5.000 g)

culture temp

@refgrowthtypetemperaturerange
7602positivegrowth28mesophilic
33989positivegrowth30mesophilic
120990positivegrowth15-30
120990nogrowth10psychrophilic
120990nogrowth37mesophilic
120990nogrowth41thermophilic
120990nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 7602
  • oxygen tolerance: anaerobe

halophily

@refsaltgrowthtested relationconcentration
120990NaClpositivegrowth0-2 %
120990NaClnogrowth4 %
120990NaClnogrowth6 %
120990NaClnogrowth8 %
120990NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12099016947citrate-carbon source
1209904853esculin-hydrolysis
120990606565hippurate+hydrolysis
12099017632nitrate-reduction
12099016301nitrite-reduction

metabolite production

  • @ref: 120990
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12099015688acetoin-
12099017234glucose-

enzymes

@refvalueactivityec
120990oxidase-
120990beta-galactosidase-3.2.1.23
120990alcohol dehydrogenase-1.1.1.1
120990gelatinase-
120990catalase+1.11.1.6
120990gamma-glutamyltransferase+2.3.2.2
120990lysine decarboxylase-4.1.1.18
120990ornithine decarboxylase-4.1.1.17
120990phenylalanine ammonia-lyase-4.3.1.24
120990tryptophan deaminase-
120990urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120990-++-------++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
7602"framboise" spoiled cidersBasse NormandieFranceFRAEurope
120990French 'framboisé' spoiled cidersBasse NormandieFranceFRAEurope2001

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Environmental#Microbial community
#Engineered#Food production#Beverage

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
76021Risk group (German classification)
1209901Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Zymomonas mobilis subsp. francensis strain AN0101 16S-23S ribosomal RNA intergenic spacer, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequenceAY940086672ena325472
20218Zymomonas mobilis subsp. francensis partial 16S rRNA gene, type strain DSM 18599TFR7499092952ena325472

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Zymomonas mobilis AN0101GCA_006715975contigncbi542
66792Zymomonas mobilis francensis DSM 185992811994955draftimg542

External links

@ref: 7602

culture collection no.: DSM 18599, CIP 108684, LMG 22974

straininfo link

  • @ref: 83443
  • straininfo: 356289

literature

  • topic: Phylogeny
  • Pubmed-ID: 16403876
  • title: Polyphasic study of Zymomonas mobilis strains revealing the existence of a novel subspecies Z. mobilis subsp. francensis subsp. nov., isolated from French cider.
  • authors: Coton M, Laplace JM, Auffray Y, Coton E
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.63732-0
  • year: 2006
  • mesh: Alcoholic Beverages/*microbiology, Bacterial Proteins/genetics, Chaperonin 60/genetics, DNA Gyrase/genetics, DNA, Intergenic/genetics, *Food Microbiology, France, Molecular Sequence Data, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Homology, Nucleic Acid, Species Specificity, Zymomonas/chemistry/*classification/isolation & purification/physiology
  • topic2: Biotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7602Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18599)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18599
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
33989Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6340
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
83443Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID356289.1StrainInfo: A central database for resolving microbial strain identifiers
120990Curators of the CIPCollection of Institut Pasteur (CIP 108684)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108684