Strain identifier
version 8.1 (current version)
General
@ref: 45815
BacDive-ID: 142514
keywords: genome sequence, Bacteria
description: Streptococcus pyogenes CCUG 12753 is a bacterium that was isolated from Human skin lesions.
NCBI tax id
- NCBI tax id: 1314
- Matching level: species
doi: 10.13145/bacdive142514.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus pyogenes
- full scientific name: Streptococcus pyogenes Rosenbach 1884 (Approved Lists 1980)
@ref: 45815
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus pyogenes
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 91.537 | |
69480 | 100 | positive |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.992 |
Isolation, sampling and environmental information
isolation
- @ref: 45815
- sample type: Human skin lesions
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body-Site | #Other | #Wound |
#Host Body-Site | #Organ | #Skin, Nail, Hair |
#Infection | #Patient |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptococcus pyogenes NCTC10871 | GCA_900459815 | contig | ncbi | 1314 |
66792 | Streptococcus pyogenes strain NCTC10871 | 1314.807 | wgs | patric | 1314 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 96.339 | no |
gram-positive | yes | 92.772 | no |
anaerobic | no | 97.081 | no |
halophile | yes | 86.661 | no |
spore-forming | no | 96.068 | no |
glucose-util | yes | 87.871 | no |
flagellated | no | 98.687 | no |
thermophile | no | 99.059 | no |
aerobic | no | 94.383 | no |
glucose-ferment | yes | 81.145 | no |
External links
@ref: 45815
culture collection no.: CCUG 12753, NCTC 10871
straininfo link
- @ref: 97995
- straininfo: 57977
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
45815 | Curators of the CCUG | https://www.ccug.se/strain?id=12753 | Culture Collection University of Gothenburg (CCUG) (CCUG 12753) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
97995 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID57977.1 |