Strain identifier
BacDive ID: 142367
Type strain: 
Species: Campylobacter coli
NCBI tax ID(s): 887307 (strain), 195 (species)
version 8.1 (current version)
General
@ref: 45644
BacDive-ID: 142367
keywords: genome sequence, Bacteria, Gram-negative
description: Campylobacter coli CCUG 12068 is a Gram-negative bacterium that was isolated from Human.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 887307 | strain |
| 195 | species |
doi: 10.13145/bacdive142367.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter coli
- full scientific name: Campylobacter coli (Doyle 1948) Véron and Chatelain 1973 (Approved Lists 1980)
synonyms
@ref synonym 20215 Vibrio coli 20215 Campylobacter hyoilei
@ref: 45644
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter coli
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.996
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 93 |
| 69480 | no | 99.997 |
Isolation, sampling and environmental information
isolation
- @ref: 45644
- sample type: Human
isolation source categories
- Cat1: #Host
- Cat2: #Human
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Campylobacter coli LMG 9853 | GCA_000254115 | contig | ncbi | 887307 |
| 66792 | Campylobacter coli LMG 9853 | 887307.3 | wgs | patric | 887307 |
| 66792 | Campylobacter coli LMG 9853 | 2516143068 | draft | img | 887307 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 93 | no |
| motile | yes | 89.734 | no |
| flagellated | yes | 65.59 | no |
| gram-positive | no | 98.841 | no |
| anaerobic | no | 90.203 | no |
| halophile | no | 88.611 | no |
| spore-forming | no | 96.353 | no |
| thermophile | no | 85.192 | no |
| glucose-util | no | 92.503 | no |
| aerobic | no | 94.779 | no |
| glucose-ferment | no | 88.13 | no |
External links
@ref: 45644
culture collection no.: CCUG 12068, CCUG 21872, NCTC 12110, LMG 9853
straininfo link
- @ref: 97900
- straininfo: 1370
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 45644 | Curators of the CCUG | https://www.ccug.se/strain?id=12068 | Culture Collection University of Gothenburg (CCUG) (CCUG 12068) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 97900 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID1370.1 |