Strain identifier
version 8.1 (current version)
General
@ref: 45608
BacDive-ID: 142337
keywords: genome sequence, Bacteria
description: Streptococcus pneumoniae CCUG 11780 is a bacterium that was isolated from Human nasopharynx,Acute otitis.
NCBI tax id
- NCBI tax id: 1313
- Matching level: species
doi: 10.13145/bacdive142337.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus pneumoniae
- full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901 (Approved Lists 1980)
synonyms
@ref synonym 20215 Staphylococcus pneumoniae 20215 Micrococcus pneumoniae
@ref: 45608
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus pneumoniae
type strain: no
Isolation, sampling and environmental information
isolation
- @ref: 45608
- sample type: Human nasopharynx,Acute otitis
- sampling date: 1981-11-18
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Oral cavity and airways | #Throat |
| #Infection | #Inflammation | |
| #Infection | #Patient |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptococcus pneumoniae CCUG 11780 | GCA_001637385 | scaffold | ncbi | 1313 |
| 66792 | Streptococcus pneumoniae strain CCUG 11780 | 1313.9540 | wgs | patric | 1313 |
| 66792 | Streptococcus pneumoniae CCUG 11780 | 2744054565 | draft | img | 1313 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 96.165 | no |
| gram-positive | yes | 93.939 | no |
| anaerobic | no | 94.293 | no |
| halophile | yes | 72.28 | no |
| spore-forming | no | 90.985 | no |
| thermophile | no | 98.544 | no |
| glucose-util | yes | 87.549 | no |
| motile | no | 93.913 | no |
| aerobic | no | 95.964 | no |
| glucose-ferment | yes | 84.647 | no |
External links
@ref: 45608
culture collection no.: CCUG 11780
straininfo link
- @ref: 97874
- straininfo: 57860
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 45608 | Curators of the CCUG | https://www.ccug.se/strain?id=11780 | Culture Collection University of Gothenburg (CCUG) (CCUG 11780) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 97874 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID57860.1 |