Strain identifier

BacDive ID: 142281

Type strain: No

Species: Escherichia coli

NCBI tax ID(s): 562 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 45543

BacDive-ID: 142281

keywords: genome sequence, Bacteria, motile

description: Escherichia coli CCUG 11425 is a motile bacterium that was isolated from Human gastroenteritis.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

doi: 10.13145/bacdive142281.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 45543

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes96.433
6948099.967negative

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.766

Isolation, sampling and environmental information

isolation

  • @ref: 45543
  • sample type: Human gastroenteritis
  • sampling date: 1949

isolation source categories

Cat1Cat2
#Host#Human
#Host Body-Site#Gastrointestinal tract
#Infection#Inflammation
#Infection#Patient

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Escherichia coli NCTC8622GCA_900449145contigncbi562
66792Escherichia coli strain NCTC8622562.34230wgspatric562

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.066no
anaerobicno94.981no
halophileno91.355no
spore-formingno94.582no
glucose-utilyes94.231no
thermophileno99.227no
flagellatedno63.102no
aerobicyes88.93no
motileyes84.505no
glucose-fermentyes92.24no

External links

@ref: 45543

culture collection no.: CCUG 11425, NCTC 8622

straininfo link

  • @ref: 97825
  • straininfo: 53703

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
45543Curators of the CCUGhttps://www.ccug.se/strain?id=11425Culture Collection University of Gothenburg (CCUG) (CCUG 11425)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
97825Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID53703.1