Strain identifier
BacDive ID: 14223
Type strain:
Species: Sphingomonas asaccharolytica
Strain Designation: Y-345
Strain history: CIP <- 2002, IFO <- M. Takeuchi, Minist. Agric. Forest. Fish, Japan: strain Y-345
NCBI tax ID(s): 1219040 (strain), 40681 (species)
General
@ref: 3976
BacDive-ID: 14223
DSM-Number: 10564
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative
description: Sphingomonas asaccharolytica Y-345 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from roots of apple tree.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1219040 | strain |
40681 | species |
strain history
@ref | history |
---|---|
3976 | <- IFO <- M. Takeuchi; Y-345 |
67770 | IAM 14458 <-- IFO 15499 <-- M. Yasuda Y-345. |
116517 | CIP <- 2002, IFO <- M. Takeuchi, Minist. Agric. Forest. Fish, Japan: strain Y-345 |
doi: 10.13145/bacdive14223.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingomonadaceae
- genus: Sphingomonas
- species: Sphingomonas asaccharolytica
- full scientific name: Sphingomonas asaccharolytica Takeuchi et al. 1995
@ref: 3976
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas asaccharolytica
full scientific name: Sphingomonas asaccharolytica Takeuchi et al. 1995
strain designation: Y-345
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 98.883 | ||
116517 | negative | rod-shaped | yes |
pigmentation
- @ref: 116517
- production: no
- name: Pyocyanin
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3976 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
39746 | MEDIUM 328- for nutrient agar | yes | Distilled water make up to (1000.000 ml);Agar (15.000 g);Peptone (5.000g);Beef extract (3.000 g) | |
116517 | CIP Medium 328 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=328 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3976 | positive | growth | 30 | mesophilic |
39746 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
116517 | positive | growth | 25-37 | mesophilic |
116517 | no | growth | 5 | psychrophilic |
116517 | no | growth | 10 | psychrophilic |
116517 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 116517
- oxygen tolerance: obligate aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.844 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
116517 | NaCl | positive | growth | 0 % |
116517 | NaCl | no | growth | 2 % |
116517 | NaCl | no | growth | 4 % |
116517 | NaCl | no | growth | 6 % |
116517 | NaCl | no | growth | 8 % |
116517 | NaCl | no | growth | 10 % |
observation
- @ref: 67770
- observation: quinones: Q-10
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
116517 | 16947 | citrate | - | carbon source |
116517 | 4853 | esculin | + | hydrolysis |
116517 | 17632 | nitrate | - | reduction |
116517 | 16301 | nitrite | - | reduction |
116517 | 17632 | nitrate | - | respiration |
metabolite production
- @ref: 116517
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
116517 | oxidase | + | |
116517 | beta-galactosidase | + | 3.2.1.23 |
116517 | alcohol dehydrogenase | - | 1.1.1.1 |
116517 | gelatinase | - | |
116517 | amylase | - | |
116517 | DNase | - | |
116517 | caseinase | - | 3.4.21.50 |
116517 | catalase | - | 1.11.1.6 |
116517 | tween esterase | - | |
116517 | lecithinase | - | |
116517 | lipase | - | |
116517 | lysine decarboxylase | - | 4.1.1.18 |
116517 | ornithine decarboxylase | - | 4.1.1.17 |
116517 | protease | - | |
116517 | tryptophan deaminase | - | |
116517 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | trypsin | + | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | + | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116517 | - | + | + | + | - | + | + | + | + | - | + | + | - | + | + | + | + | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116517 | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | isolation date |
---|---|---|---|---|---|
3976 | roots of apple tree | Japan | JPN | Asia | |
67770 | Root of apple tree | ||||
116517 | Japan | JPN | Asia | 1992 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Tree |
#Host Body-Site | #Plant | #Root (Rhizome) |
taxonmaps
- @ref: 69479
- File name: preview.99_3642.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_348;97_388;98_2785;99_3642&stattab=map
- Last taxonomy: Sphingomonas
- 16S sequence: Y09639
- Sequence Identity:
- Total samples: 2385
- soil counts: 1345
- aquatic counts: 484
- animal counts: 298
- plant counts: 258
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
3976 | 1 | Risk group (German classification) |
116517 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Sphingomonas asaccharolytica gene for 16S rRNA, partial sequence, strain: NBRC 15499 | AB680883 | 1412 | ena | 40681 |
20218 | Sphingomonas asaccharolytica gene for 16S rRNA, partial sequence, strain:IFO15499 | D28572 | 176 | ena | 40681 |
20218 | Sphingomonas asaccharolytica gene for 16S rRNA, partial sequence, strain:IFO15499 | D28573 | 829 | ena | 40681 |
20218 | Sphingomonas asaccharolytica partial 16S rRNA gene, strain IFO 15499-T | Y09639 | 1442 | ena | 40681 |
67770 | Sphingomonas asaccharolytica gene for 16S rRNA, partial sequence, strain:IFO15499 | D28571 | 251 | ena | 40681 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Sphingomonas asaccharolytica NBRC 15499 | 1219040.3 | wgs | patric | 1219040 |
66792 | Sphingomonas asaccharolytica NBRC 15499 | 2731957698 | draft | img | 1219040 |
67770 | Sphingomonas asaccharolytica NBRC 15499 | GCA_001598355 | contig | ncbi | 1219040 |
GC content
@ref | GC-content | method |
---|---|---|
3976 | 64.8 | |
67770 | 64.8 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 69.454 | no |
gram-positive | no | 96.827 | no |
anaerobic | no | 99.372 | no |
halophile | no | 94.526 | no |
spore-forming | no | 92.813 | no |
thermophile | no | 98.072 | no |
glucose-util | yes | 90.517 | no |
flagellated | no | 89.688 | no |
aerobic | yes | 94.24 | no |
glucose-ferment | no | 90.932 | no |
External links
@ref: 3976
culture collection no.: DSM 10564, IFO 15499, NBRC 15499, NCIMB 13747, JCM 21229, ATCC 51839, CIP 107363, IAM 14458, KCTC 2825, LMG 17539, NRRL B-4261
straininfo link
- @ref: 83382
- straininfo: 343906
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 7537068 | Taxonomic study of bacteria isolated from plants: proposal of Sphingomonas rosa sp. nov., Sphingomonas pruni sp. nov., Sphingomonas asaccharolytica sp. nov., and Sphingomonas mali sp. nov. | Takeuchi M, Sakane T, Yanagi M, Yamasato K, Hamana K, Yokota A | Int J Syst Bacteriol | 10.1099/00207713-45-2-334 | 1995 | DNA, Bacterial/genetics, Gram-Negative Aerobic Bacteria/chemistry/*classification/physiology, Lactose/analogs & derivatives/metabolism, Phylogeny, Plants/*microbiology, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics | Metabolism |
Phylogeny | 15545456 | Sphingomonas oligophenolica sp. nov., a halo- and organo-sensitive oligotrophic bacterium from paddy soil that degrades phenolic acids at low concentrations. | Ohta H, Hattori R, Ushiba Y, Mitsui H, Ito M, Watanabe H, Tonosaki A, Hattori T | Int J Syst Evol Microbiol | 10.1099/ijs.0.02959-0 | 2004 | Aerobiosis, Bacteria, Bacterial Typing Techniques, Calcium Chloride/metabolism, Coenzymes, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis/isolation & purification, Genes, rRNA, Gentian Violet, Glycosphingolipids/analysis/isolation & purification, Growth Inhibitors/pharmacology, Hydroxybenzoates/*metabolism, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Phenazines, Phylogeny, Pigments, Biological/biosynthesis, Quinones/analysis/isolation & purification, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sodium Chloride/pharmacology, *Soil Microbiology, Sphingomonadaceae/*classification/cytology/*isolation & purification/physiology, Ubiquinone/*analogs & derivatives/isolation & purification | Enzymology |
Phylogeny | 17267979 | Sphingomonas molluscorum sp. nov., a novel marine isolate with antimicrobial activity. | Romanenko LA, Uchino M, Frolova GM, Tanaka N, Kalinovskaya NI, Latyshev N, Mikhailov VV | Int J Syst Evol Microbiol | 10.1099/ijs.0.64441-0 | 2007 | Aerobiosis, Animals, *Antibiosis, Arcidae/*microbiology, Bacterial Typing Techniques, Carbohydrate Metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis/chemistry, Genes, rRNA, Glycosphingolipids/analysis/chemistry, Gram-Positive Bacteria/drug effects, Japan, Molecular Sequence Data, Movement, Nucleic Acid Hybridization, Phylogeny, Pigments, Biological/biosynthesis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sphingomonas/*classification/cytology/*isolation & purification/physiology | Genetics |
Phylogeny | 17590230 | Sphingomonas astaxanthinifaciens sp. nov., a novel astaxanthin-producing bacterium of the family Sphingomonadaceae isolated from Misasa, Tottori, Japan. | Asker D, Beppu T, Ueda K | FEMS Microbiol Lett | 10.1111/j.1574-6968.2007.00760.x | 2007 | Carotenoids/chemistry/classification, Fresh Water/*microbiology, Japan, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/chemistry/classification, Sequence Analysis, DNA, Sphingomonas/*classification/isolation & purification/metabolism, Xanthophylls/biosynthesis | Genetics |
Phylogeny | 17625171 | Sphingomonas jaspsi sp. nov., a novel carotenoid-producing bacterium isolated from Misasa, Tottori, Japan. | Asker D, Beppu T, Ueda K | Int J Syst Evol Microbiol | 10.1099/ijs.0.64828-0 | 2007 | Aerobiosis, Bacterial Typing Techniques, Base Composition, Carotenoids/*biosynthesis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/*microbiology, Gamma Rays, Genes, rRNA, Glycolipids/analysis, Japan, Locomotion, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Pigments, Biological/biosynthesis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sphingomonas/chemistry/*classification/genetics/*isolation & purification, Ubiquinone/analysis | Genetics |
Phylogeny | 19502316 | Sphingomonas aestuarii sp. nov., isolated from tidal flat sediment. | Roh SW, Kim KH, Nam YD, Chang HW, Kim MS, Oh HM, Bae JW | Int J Syst Evol Microbiol | 10.1099/ijs.0.65528-0 | 2009 | Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genotype, Geologic Sediments/*microbiology, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Sphingomonas/*classification/genetics/isolation & purification/physiology | Genetics |
Phylogeny | 22307515 | Sphingomonas indica sp. nov., isolated from hexachlorocyclohexane (HCH)-contaminated soil. | Niharika N, Jindal S, Kaur J, Lal R | Int J Syst Evol Microbiol | 10.1099/ijs.0.033845-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Hexachlorocyclohexane/*analysis, India, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants/*analysis, Spermidine/analogs & derivatives/analysis, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/analogs & derivatives/analysis | Genetics |
Phylogeny | 24425812 | Sphingomonas aerophila sp. nov. and Sphingomonas naasensis sp. nov., isolated from air and soil, respectively. | Kim SJ, Moon JY, Lim JM, Ahn JH, Weon HY, Ahn TY, Kwon SW | Int J Syst Evol Microbiol | 10.1099/ijs.0.055269-0 | 2013 | *Air Microbiology, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistry | Genetics |
Phylogeny | 25604345 | Sphingomonas gei sp. nov., isolated from roots of Geum aleppicum. | Zhu L, Si M, Li C, Xin K, Chen C, Shi X, Huang R, Zhao L, Shen X, Zhang L | Int J Syst Evol Microbiol | 10.1099/ijs.0.000074 | 2015 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geum/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/analogs & derivatives/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistry | Genetics |
Phylogeny | 26155772 | Sphingomonas panacis sp. nov., isolated from rhizosphere of rusty ginseng. | Singh P, Kim YJ, Hoang VA, Farh Mel-A, Yang DC | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0527-y | 2015 | Aerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Locomotion, Nucleic Acid Hybridization, Panax/*microbiology, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/analysis, Sphingomonas/*classification/genetics/*isolation & purification/physiology, Temperature | Transcriptome |
Phylogeny | 26410379 | Sphingomonas hengshuiensis sp. nov., isolated from lake wetland. | Wei S, Wang T, Liu H, Zhang C, Guo J, Wang Q, Liang K, Zhang Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000626 | 2015 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycosphingolipids/chemistry, Lakes, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/analogs & derivatives/chemistry, Sphingomonas/*classification/genetics/isolation & purification, Ubiquinone/chemistry, *Wetlands | Genetics |
Phylogeny | 33560200 | Sphingomonas panacisoli sp. nov., bacterium isolated from soil in South Korea. | Maeng S, Liu Q, Park Y, Bai J, Im WT | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004675 | 2021 | ||
Phylogeny | 36477930 | Sphingomonas liriopis sp. nov., Sphingomonas donggukensis sp. nov., and Sphingomonas tagetis sp. nov., isolated from Liriope platyphylla fruit, soil, and Tagetes patula roots. | Kim I, Chhetri G, So Y, Jung Y, Park S, Seo T | Arch Microbiol | 10.1007/s00203-022-03360-4 | 2022 | *Tagetes, Soil, *Sphingomonas/genetics, Fruit, RNA, Ribosomal, 16S/genetics, Phylogeny, DNA |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
3976 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10564) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10564 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
39746 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/4790 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
83382 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID343906.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116517 | Curators of the CIP | Collection of Institut Pasteur (CIP 107363) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107363 |