Strain identifier
version 8.1 (current version)
General
@ref: 45260
BacDive-ID: 142033
keywords: Bacteria, anaerobe, mesophilic
description: Gardnerella vaginalis CCUG 10059 is an anaerobe, mesophilic bacterium that was isolated from Human urine.
NCBI tax id
- NCBI tax id: 2702
- Matching level: species
doi: 10.13145/bacdive142033.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Bifidobacteriales
- family: Bifidobacteriaceae
- genus: Gardnerella
- species: Gardnerella vaginalis
- full scientific name: Gardnerella vaginalis (Gardner and Dukes 1955) Greenwood and Pickett 1980
synonyms
@ref synonym 20215 Corynebacterium vaginale 20215 Haemophilus vaginalis
@ref: 45260
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Gardnerella
species: Gardnerella vaginalis
type strain: no
Culture and growth conditions
culture temp
- @ref: 45260
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 45260 | anaerobe |
| 45260 | microaerophile |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68379 | 17632 | nitrate | - | reduction |
| 68379 | 4853 | esculin | - | hydrolysis |
| 68379 | 16199 | urea | - | hydrolysis |
| 68379 | 5291 | gelatin | - | hydrolysis |
| 68379 | 16988 | D-ribose | + | fermentation |
| 68379 | 65327 | D-xylose | - | fermentation |
| 68379 | 16899 | D-mannitol | - | fermentation |
| 68379 | 17306 | maltose | + | fermentation |
| 68379 | 17716 | lactose | - | fermentation |
| 68379 | 17992 | sucrose | - | fermentation |
| 68379 | 28087 | glycogen | - | fermentation |
| 68377 | 17634 | D-glucose | + | builds acid from |
| 68377 | 15824 | D-fructose | + | builds acid from |
| 68377 | 17306 | maltose | + | builds acid from |
| 68377 | 17992 | sucrose | - | builds acid from |
| 68377 | 18257 | ornithine | - | degradation |
| 68377 | 16199 | urea | - | hydrolysis |
| 68377 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68377 | tryptophan deaminase | - | 4.1.99.1 |
| 68377 | gamma-glutamyltransferase | - | 2.3.2.2 |
| 68377 | proline-arylamidase | + | 3.4.11.5 |
| 68377 | beta-galactosidase | - | 3.2.1.23 |
| 68377 | alkaline phosphatase | - | 3.1.3.1 |
| 68377 | lipase | - | |
| 68377 | urease | - | 3.5.1.5 |
| 68377 | ornithine decarboxylase | - | 4.1.1.17 |
| 68377 | beta-lactamase | - | 3.5.2.6 |
| 68379 | catalase | - | 1.11.1.6 |
| 68379 | gelatinase | - | |
| 68379 | urease | - | 3.5.1.5 |
| 68379 | beta-glucosidase | - | 3.2.1.21 |
| 68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
| 68379 | alpha-glucosidase | + | 3.2.1.20 |
| 68379 | beta-galactosidase | - | 3.2.1.23 |
| 68379 | beta-glucuronidase | - | 3.2.1.31 |
| 68379 | alkaline phosphatase | - | 3.1.3.1 |
| 68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
| 68379 | pyrazinamidase | + | 3.5.1.B15 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 45260 C12:0 1.9 12 45260 C14:0 9.3 14 45260 C16:0 38.5 16 45260 C18:0 7.1 18 45260 C16:1 ω9c 2.7 15.774 45260 C17:1 ISO I/C16:0 DMA 1.8 16.481 45260 C18:1 ω9c 25.4 17.769 45260 C18:2 ω6,9c/C18:0 ANTE 13.5 17.724 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API coryne
| @ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | CAT |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45260 | - | + | - | - | - | - | + | - | - | - | - | - | + | - | - | + | - | - | - | - |
API NH
| @ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45260 | - | + | + | + | - | - | - | - | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 45260
- sample type: Human urine
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Fluids | #Urine |
External links
@ref: 45260
culture collection no.: CCUG 10059, LMG 21847
straininfo link
- @ref: 97612
- straininfo: 54076
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 45260 | Curators of the CCUG | https://www.ccug.se/strain?id=10059 | Culture Collection University of Gothenburg (CCUG) (CCUG 10059) | |
| 68377 | Automatically annotated from API NH | |||
| 68379 | Automatically annotated from API Coryne | |||
| 97612 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID54076.1 |