Strain identifier

BacDive ID: 14202

Type strain: No

Species: Flavobacterium devorans

Strain history: CIP <- 1996, CCUG <- 1972, CCM <- F.J. de Fontenoy <- N. Porges

NCBI tax ID(s): 13689 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 9196

BacDive-ID: 14202

DSM-Number: 30198

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative

description: Flavobacterium devorans DSM 30198 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Flavobacteriaceae.

NCBI tax id

  • NCBI tax id: 13689
  • Matching level: species

strain history

@refhistory
9196<- ATCC; ATCC 10829 <- NRRL; NRRL B 54 (Flavobacterium devorans) <- F.J. de Fontenoy; <- N. Porges;
67770GIFU 1367 <-- RIMD.
121632CIP <- 1996, CCUG <- 1972, CCM <- F.J. de Fontenoy <- N. Porges

doi: 10.13145/bacdive14202.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium devorans
  • full scientific name: Flavobacterium devorans (Zimmermann 1890) Bergey et al. 1923 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus devorans

@ref: 9196

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas paucimobilis

full scientific name: Sphingomonas paucimobilis (Holmes et al. 1977) Yabuuchi et al. 1990

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.986
121632negativerod-shapedno

pigmentation

  • @ref: 121632
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
35760MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
9196TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yesName: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/92
9196COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yesName: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar basehttps://mediadive.dsmz.de/medium/693
121632CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
9196positivegrowth30mesophilic
35760positivegrowth30mesophilic
67770positivegrowth30mesophilic
121632positivegrowth25-37mesophilic
121632nogrowth5psychrophilic
121632nogrowth10psychrophilic
121632nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 121632
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.992

compound production

@refcompound
9196FAD
9196vitamin B12
9196flavin-adenine dinucleotide
9196sphingoglycolipid
9196glucose isomerase

halophily

@refsaltgrowthtested relationconcentration
121632NaClpositivegrowth0-2 %
121632NaClnogrowth4 %
121632NaClnogrowth8 %
121632NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose+builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371xylitol-builds acid from17151
68371raffinose-builds acid from16634
68371melezitose+builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371esculin+builds acid from4853
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
68369malate+assimilation25115
68369adipate-assimilation17128
68369decanoate-assimilation27689
68369maltose+assimilation17306
68369N-acetylglucosamine+assimilation59640
68369D-mannitol-assimilation16899
68369D-mannose+assimilation16024
68369L-arabinose+assimilation30849
68369D-glucose+assimilation17634
68369gelatin-hydrolysis5291
68369esculin+hydrolysis4853
68369urea-hydrolysis16199
68369arginine-hydrolysis29016
68369D-glucose-fermentation17634
68369tryptophan-energy source27897
68369nitrate-reduction17632
121632citrate-carbon source16947
121632esculin+hydrolysis4853
121632nitrate+reduction17632
121632nitrite-reduction16301
121632phenol+degradation15882
121632nitrate-respiration17632

antibiotic resistance

  • @ref: 121632
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12163235581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
121632oxidase+
121632beta-galactosidase+3.2.1.23
121632alcohol dehydrogenase-1.1.1.1
121632gelatinase-
121632amylase-
121632DNase-
121632caseinase-3.4.21.50
121632catalase+1.11.1.6
121632tween esterase-
121632lecithinase-
121632lipase-
121632lysine decarboxylase-4.1.1.18
121632ornithine decarboxylase-4.1.1.17
121632tryptophan deaminase-
121632urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121632-+++-+---+++-+--++--

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
9196-----+-++++-+++/---+--+
9196-----+-++++-+++/---+--+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121632---+-+---+++/-+/---------++/-+/-++/-+/-+/-+/--++-+-+/-+/--+/----+------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
121632+++++-+++++++--++++-+++-++--------++-----+-------+---------+--++-------+-------++-------++++-+----+

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_2134.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_761;97_956;98_1667;99_2134&stattab=map
  • Last taxonomy: Sphingomonas paucimobilis
  • 16S sequence: LC504026
  • Sequence Identity:
  • Total samples: 942
  • soil counts: 195
  • aquatic counts: 244
  • animal counts: 345
  • plant counts: 158

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
91962Risk group (German classification)
1216321Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Sphingomonas paucimobilis JCM 7511 gene for 16S ribosomal RNA, partial sequence
  • accession: LC504026
  • length: 1411
  • database: ena
  • NCBI tax ID: 13689

Genome sequences

  • @ref: 66792
  • description: Sphingomonas paucimobilis strain FDAARGOS_881
  • accession: 13689.30
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 13689

GC content

  • @ref: 9196
  • GC-content: 67.7

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno69no
motileyes69.489no
gram-positiveno96.814no
anaerobicno98.944no
halophileno91.785no
spore-formingno93.983no
thermophileno98.484yes
glucose-utilyes91.968yes
flagellatedno90.31no
aerobicyes93.817no
glucose-fermentno90.765no

External links

@ref: 9196

culture collection no.: DSM 30198, ATCC 10829, CCM 72, CIP 104977, NCIB 8195, JCM 7511, IFO 13934, NBRC 13934, NRRL B-54, CCUG 1819, NCIMB 8195

straininfo link

  • @ref: 83361
  • straininfo: 361758

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny659393Isolation of a novel sphingoglycolipid containing glucuronic acid and 2-hydroxy fatty acid from Flavobacterium devorans ATCC 10829.Yamamoto A, Yano I, Masui M, Yabuuchi EJ Biochem10.1093/oxfordjournals.jbchem.a1320151978Flavobacterium/*analysis, Glucuronates/analysis, Glycosphingolipids/*isolation & purification, Hydroxy Acids/analysisEnzymology
Phylogeny7183747The similarities between Pseudomonas paucimobilis and allied bacteria derived from analysis of deoxyribonucleic acids and electrophoretic protein patterns.Owen RJ, Jackman PJJ Gen Microbiol10.1099/00221287-128-12-29451982Bacterial Proteins/*analysis, Base Composition, Chromobacterium/analysis/classification, *DNA, Bacterial, Electrophoresis, Polyacrylamide Gel, Flavobacterium/analysis/classification, Nucleic Acid Hybridization, Pseudomonas/analysis/*classification, Xanthomonas/analysis/classificationEnzymology
Enzymology15016454Purification and characterization of ascorbic acid 2-kinase from Flavobacterium devorans ATCC 10829.Jung Ahn M, Young Moon J, Ook Kang D, Cho YKBiochimie10.1016/j.biochi.2003.11.0142004Ascorbic Acid/*analogs & derivatives/chemistry/isolation & purification, Enzyme Activation/drug effects, Enzyme Inhibitors/pharmacology, Flavobacterium/*enzymology/growth & development, Hydrogen-Ion Concentration, Metals/chemistry/pharmacology, Models, Chemical, Molecular Weight, Phosphoric Monoester Hydrolases/chemistry, Phosphotransferases/antagonists & inhibitors/*chemistry/*isolation & purification, Substrate Specificity, Temperature, Time FactorsPhylogeny

Reference

@idauthorscataloguedoi/urltitle
9196Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30198)https://www.dsmz.de/collection/catalogue/details/culture/DSM-30198
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
35760Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16945
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
83361Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID361758.1StrainInfo: A central database for resolving microbial strain identifiers
121632Curators of the CIPCollection of Institut Pasteur (CIP 104977)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104977