Strain identifier

BacDive ID: 141873

Type strain: No

Species: Streptococcus fryi

Strain history: J. Tomida PAGU 653 <-- GIFU 8813 <-- NCTC 10235 <-- M. T. Parker SHC/285.

NCBI tax ID(s): 1306 (species)

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General

@ref: 45059

BacDive-ID: 141873

keywords: 16S sequence, Bacteria, mesophilic

description: Streptococcus fryi CCUG 7979 is a mesophilic bacterium that was isolated from Dog.

NCBI tax id

  • NCBI tax id: 1306
  • Matching level: species

strain history

  • @ref: 67770
  • history: J. Tomida PAGU 653 <-- GIFU 8813 <-- NCTC 10235 <-- M. T. Parker SHC/285.

doi: 10.13145/bacdive141873.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus fryi
  • full scientific name: Streptococcus fryi Tomida et al. 2021

@ref: 45059

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus sp.

type strain: no

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source
6838129016arginine+hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose-builds acid from
6838116634raffinose-builds acid from
6838117992sucrose-builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose-builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6838035581indoleno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6838115688acetoin-
6838035581indole-

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase+3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase+3.5.3.6
68380serine arylamidase+
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase+3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
45059---+-+----------+++++++++++-+

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
45059+----+-----------++--+----------

Isolation, sampling and environmental information

isolation

@refsample type
45059Dog
67770Dog

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Canidae (Dog)

taxonmaps

  • @ref: 69479
  • File name: preview.99_27823.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_13210;97_16050;98_19886;99_27823&stattab=map
  • Last taxonomy: Streptococcus fryi subclade
  • 16S sequence: LC519990
  • Sequence Identity:
  • Total samples: 1522
  • soil counts: 6
  • aquatic counts: 12
  • animal counts: 1492
  • plant counts: 12

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Streptococcus fryi gene for 16S ribosomal RNA, partial sequence, strain: PAGU 653AB5136681406ena661498
67770Streptococcus fryi JCM 16387 gene for 16S rRNA, partial sequenceLC5199901486ena661498

GC content

  • @ref: 67770
  • GC-content: 38.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 45059

culture collection no.: CCUG 7979, NCTC 10235, JCM 16387, GIFU 8813

straininfo link

  • @ref: 97476
  • straininfo: 108007

literature

  • topic: Phylogeny
  • Pubmed-ID: 21091531
  • title: Streptococcus fryi sp. nov., a novel species with Lancefield group M antigens.
  • authors: Tomida J, Sauer S, Morita Y, Ezaki T, Kawamura Y
  • journal: FEMS Microbiol Lett
  • DOI: 10.1111/j.1574-6968.2010.02148.x
  • year: 2010
  • mesh: Animals, Antigens, Bacterial/genetics/immunology, Bacterial Typing Techniques, DNA, Bacterial/genetics, Dogs, Humans, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Streptococcal Infections/*microbiology/*veterinary, Streptococcus/*classification/genetics/immunology/*isolation & purification
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
45059Curators of the CCUGhttps://www.ccug.se/strain?id=7979Culture Collection University of Gothenburg (CCUG) (CCUG 7979)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68380Automatically annotated from API rID32A
68381Automatically annotated from API rID32STR
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
97476Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID108007.1