Strain identifier
version 8.1 (current version)
General
@ref: 44929
BacDive-ID: 141787
keywords: genome sequence, Bacteria
description: Streptococcus pneumoniae CCUG 6798 is a bacterium that was isolated from Human blood,70-yr-old woman,pneumonia.
NCBI tax id
- NCBI tax id: 1313
- Matching level: species
doi: 10.13145/bacdive141787.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Streptococcaceae
- genus: Streptococcus
- species: Streptococcus pneumoniae
- full scientific name: Streptococcus pneumoniae (Klein 1884) Chester 1901 (Approved Lists 1980)
synonyms
@ref synonym 20215 Staphylococcus pneumoniae 20215 Micrococcus pneumoniae
@ref: 44929
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Streptococcaceae
genus: Streptococcus
species: Streptococcus pneumoniae
type strain: no
Isolation, sampling and environmental information
isolation
- @ref: 44929
- sample type: Human blood,70-yr-old woman,pneumonia
- sampling date: 1977-12-26
- geographic location: Göteborg
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | #Female |
#Host Body Product | #Fluids | #Blood |
#Infection | #Inflammation | |
#Infection | #Patient |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Streptococcus pneumoniae CCUG 6798 | GCA_001678985 | scaffold | ncbi | 1313 |
66792 | Streptococcus pneumoniae strain CCUG 6798 | 1313.13074 | wgs | patric | 1313 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 96.67 | no |
gram-positive | yes | 93.07 | no |
anaerobic | no | 94.789 | no |
aerobic | no | 96.167 | no |
halophile | yes | 80.421 | no |
spore-forming | no | 93.272 | no |
glucose-util | yes | 87.757 | no |
thermophile | no | 98.783 | no |
motile | no | 94.919 | no |
glucose-ferment | yes | 86.038 | no |
External links
@ref: 44929
culture collection no.: CCUG 6798
straininfo link
- @ref: 97412
- straininfo: 57823
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
44929 | Curators of the CCUG | https://www.ccug.se/strain?id=6798 | Culture Collection University of Gothenburg (CCUG) (CCUG 6798) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
97412 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID57823.1 |