Strain identifier

BacDive ID: 141744

Type strain: Yes

Species: Leptospira biflexa

Strain Designation: LEP1342

Strain history: CIP <- 2002, D. Postic, Inst. Pasteur, Paris, France <- Buenos Aires, Argentina: strain Patoc 1

NCBI tax ID(s): 172 (species)

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General

@ref: 44874

BacDive-ID: 141744

keywords: genome sequence, Bacteria, mesophilic, motile

description: Leptospira biflexa LEP1342 is a mesophilic, motile bacterium that was isolated from Stream water.

NCBI tax id

  • NCBI tax id: 172
  • Matching level: species

strain history

  • @ref: 116812
  • history: CIP <- 2002, D. Postic, Inst. Pasteur, Paris, France <- Buenos Aires, Argentina: strain Patoc 1

doi: 10.13145/bacdive141744.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/spirochaetota
  • domain: Bacteria
  • phylum: Spirochaetota
  • class: Spirochaetia
  • order: Leptospirales
  • family: Leptospiraceae
  • genus: Leptospira
  • species: Leptospira biflexa
  • full scientific name: Leptospira biflexa (Wolbach and Binger 1914) Noguchi 1918 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Spirochaeta biflexa

@ref: 44874

domain: Bacteria

phylum: Spirochaetes

class: Spirochaetes

order: Leptospirales

family: Leptospiraceae

genus: Leptospira

species: Leptospira biflexa

strain designation: LEP1342

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes93.194
6948099.901negative

Culture and growth conditions

culture medium

  • @ref: 116812
  • name: CIP Medium 189
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=189

culture temp

  • @ref: 116812
  • growth: positive
  • type: growth
  • temperature: 29
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.983

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116812-------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
44874Stream waterItalyITAEurope
116812Environment, WaterItalyITAEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #River (Creek)

Safety information

risk assessment

  • @ref: 116812
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'456481.4completepatric456481
66792Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' strain Patoc 1 (Paris) strain Patoc 1 (Paris) strain Patoc 1 (Paris)456481.32plasmidpatric456481

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.028no
anaerobicno94.784no
halophileno89.844no
spore-formingno93.883no
glucose-utilyes64.233no
aerobicyes71.314no
flagellatedno69.023no
thermophileno97.645no
motileyes88.275no
glucose-fermentno89.385no

External links

@ref: 44874

culture collection no.: CCUG 5912, ATCC 23582, CRBIP6.1342, CRBIP6.1176, Patoc 1

straininfo link

  • @ref: 97375
  • straininfo: 38106

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44874Curators of the CCUGhttps://www.ccug.se/strain?id=5912Culture Collection University of Gothenburg (CCUG) (CCUG 5912)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68371Automatically annotated from API 50CH acid
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
97375Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID38106.1
116812Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CRBIP6.1342Collection of Institut Pasteur (CRBIP6.1342)