Strain identifier
version 9.3 (current version)
General
@ref: 44816
BacDive-ID: 141696
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic
description: Fusobacterium necrogenes CCUG 4949 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from Duck caecum.
NCBI tax id
- NCBI tax id: 858
- Matching level: species
doi: 10.13145/bacdive141696.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/fusobacteriota
- domain: Bacteria
- phylum: Fusobacteriota
- class: Fusobacteriia
- order: Fusobacteriales
- family: Fusobacteriaceae
- genus: Fusobacterium
- species: Fusobacterium necrogenes
- full scientific name: Fusobacterium necrogenes (Weinberg et al. 1937) Moore and Holdeman 1970 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus necrogenes
@ref: 44816
domain: Bacteria
phylum: Fusobacteria
class: Fusobacteriia
order: Fusobacteriales
family: Fusobacteriaceae
genus: Fusobacterium
species: Fusobacterium necrogenes
type strain: yes
Culture and growth conditions
culture temp
- @ref: 44816
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 44816 | anaerobe | |
| 125438 | anaerobe | 92.948 |
| 125439 | anaerobe | 99.9 |
Isolation, sampling and environmental information
isolation
- @ref: 44816
- sample type: Duck caecum
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Host | #Birds |
| #Host Body-Site | #Gastrointestinal tract |
Sequence information
16S sequences
- @ref: 124043
- description: Fusobacterium necrogenes 16S rRNA gene, strain ATCC 25556
- accession: AJ867034
- length: 1455
- database: nuccore
- NCBI tax ID: 858
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Fusobacterium necrogenes NCTC10723 | GCA_900450765 | contig | ncbi | 858 |
| 66792 | Fusobacterium necrogenes strain NCTC10723 | 858.4 | wgs | patric | 858 |
| 66792 | Fusobacterium necrogenes NCTC 10723 | 2869315825 | draft | img | 858 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 85.552 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 92.948 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 97.82 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 72.076 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 89.702 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 82.7 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 64.1 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 69.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 80.7 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 99.9 |
External links
@ref: 44816
culture collection no.: CCUG 4949, ATCC 25556, NCTC 10723
straininfo link
- @ref: 97329
- straininfo: 38595
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 44816 | Curators of the CCUG | https://www.ccug.se/strain?id=4949 | Culture Collection University of Gothenburg (CCUG) (CCUG 4949) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 97329 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID38595.1 | |
| 124043 | Isabel Schober, Julia Koblitz | Data extracted from sequence databases, automatically matched based on designation and taxonomy | ||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |