Strain identifier

BacDive ID: 141696

Type strain: Yes

Species: Fusobacterium necrogenes

NCBI tax ID(s): 858 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 44816

BacDive-ID: 141696

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative

description: Fusobacterium necrogenes CCUG 4949 is an anaerobe, Gram-negative bacterium that was isolated from Duck caecum.

NCBI tax id

  • NCBI tax id: 858
  • Matching level: species

doi: 10.13145/bacdive141696.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/fusobacteriota
  • domain: Bacteria
  • phylum: Fusobacteriota
  • class: Fusobacteriia
  • order: Fusobacteriales
  • family: Fusobacteriaceae
  • genus: Fusobacterium
  • species: Fusobacterium necrogenes
  • full scientific name: Fusobacterium necrogenes (Weinberg et al. 1937) Moore and Holdeman 1970 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacillus necrogenes

@ref: 44816

domain: Bacteria

phylum: Fusobacteria

class: Fusobacteriia

order: Fusobacteriales

family: Fusobacteriaceae

genus: Fusobacterium

species: Fusobacterium necrogenes

type strain: yes

Morphology

cell morphology

@refgram stainconfidencemotility
69480negative91.378
6948092.658no

Culture and growth conditions

culture temp

  • @ref: 44816
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
44816anaerobe
69480anaerobe99.668

spore formation

@refspore formationconfidence
69480no92.622
69481yes96

Isolation, sampling and environmental information

isolation

  • @ref: 44816
  • sample type: Duck caecum

isolation source categories

Cat1Cat2
#Host#Birds
#Host Body-Site#Gastrointestinal tract

Sequence information

16S sequences

  • @ref: 124043
  • description: Fusobacterium necrogenes 16S rRNA gene, strain ATCC 25556
  • accession: AJ867034
  • length: 1455
  • database: nuccore
  • NCBI tax ID: 858

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Fusobacterium necrogenes NCTC10723GCA_900450765contigncbi858
66792Fusobacterium necrogenes strain NCTC10723858.4wgspatric858
66792Fusobacterium necrogenes NCTC 107232869315825draftimg858

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes96no
motileno92.658no
flagellatedno95.627no
gram-positiveno91.378no
anaerobicyes99.668yes
halophileno69.319no
spore-formingno92.622no
thermophileno94.311yes
glucose-utilyes83.95no
aerobicno98.597yes
glucose-fermentno55.803no

External links

@ref: 44816

culture collection no.: CCUG 4949, ATCC 25556, NCTC 10723

straininfo link

  • @ref: 97329
  • straininfo: 38595

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44816Curators of the CCUGhttps://www.ccug.se/strain?id=4949Culture Collection University of Gothenburg (CCUG) (CCUG 4949)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
97329Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID38595.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy