Strain identifier

BacDive ID: 141637

Type strain: No

Species: Streptococcus sp.

NCBI tax ID(s): 1306 (species)

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General

@ref: 44717

BacDive-ID: 141637

keywords: genome sequence, Bacteria

description: Streptococcus sp. CCUG 4212 is a bacterium that was isolated from Human sputum.

NCBI tax id

  • NCBI tax id: 1306
  • Matching level: species

doi: 10.13145/bacdive141637.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus sp.
  • full scientific name: Streptococcus Rosenbach 1884 (Approved Lists 1980)

@ref: 44717

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus sp.

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.844
69480100positive

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.944

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose-builds acid from
6838116634raffinose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan+builds acid from
6838117306maltose+builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
44717----+----+-++---++------+++-----
44717----+----+-++----+---+--++------

Isolation, sampling and environmental information

isolation

  • @ref: 44717
  • sample type: Human sputum
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Sputum

Sequence information

Genome sequences

  • @ref: 66792
  • description: Streptococcus mitis strain NCTC 10712
  • accession: 28037.210
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 28037

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno95.743no
gram-positiveyes93.855no
anaerobicno97.294no
halophileyes75.186no
spore-formingno91.118no
glucose-utilyes86.206no
flagellatedno96.197no
aerobicno96.449no
thermophileno99.111no
glucose-fermentyes81.079no

External links

@ref: 44717

culture collection no.: CCUG 4212, NCTC 10712

straininfo link

  • @ref: 97272
  • straininfo: 13949

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44717Curators of the CCUGhttps://www.ccug.se/strain?id=4212Culture Collection University of Gothenburg (CCUG) (CCUG 4212)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
97272Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID13949.1