Strain identifier

BacDive ID: 141636

Type strain: No

Species: Streptococcus agalactiae

NCBI tax ID(s): 1311 (species)

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General

@ref: 44715

BacDive-ID: 141636

keywords: genome sequence, Bacteria

description: Streptococcus agalactiae CCUG 4209 is a bacterium of the family Streptococcaceae.

NCBI tax id

  • NCBI tax id: 1311
  • Matching level: species

doi: 10.13145/bacdive141636.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus agalactiae
  • full scientific name: Streptococcus agalactiae Lehmann and Neumann 1896 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptococcus difficile
    20215Streptococcus difficilis

@ref: 44715

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus agalactiae

type strain: no

Morphology

cell morphology

  • @ref: 125439
  • gram stain: positive
  • confidence: 91.8

Physiology and metabolism

oxygen tolerance

  • @ref: 125439
  • oxygen tolerance: microaerophile
  • confidence: 96.9

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 91.2

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838128053melibiose-builds acid from
6838117306maltose+builds acid from
6838127941pullulan+builds acid from
6838128087glycogen-builds acid from
68381606565hippurate+hydrolysis
6838140585alpha-cyclodextrin-builds acid from
6838118333D-arabitol-builds acid from
6838130849L-arabinose-builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838127082trehalose+builds acid from
6838117716lactose+builds acid from
6838130911sorbitol-builds acid from
6838116899D-mannitol-builds acid from
6838129016arginine+hydrolysis
6838116988D-ribose+builds acid from

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68381beta-mannosidase-3.2.1.25
68381pyrrolidonyl arylamidase-3.4.19.3
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase+3.1.3.1
68381beta-glucuronidase+3.2.1.31
68381alpha-galactosidase-3.2.1.22
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase+3.5.3.6
68381urease-3.5.1.5
68381glycyl tryptophan arylamidase-

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
44715+--+-++--++-+---++----+-++--+---

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptococcus agalactiae NCTC9993GCA_900458985contigncbi1311
66792Streptococcus agalactiae strain NCTC99931311.1748wgspatric1311

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes85.085no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no89.82no
125438spore-formingspore-formingAbility to form endo- or exosporesno87.01no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no96.271no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96.442no
125438motile2+flagellatedAbility to perform flagellated movementno89no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno91.2
125439BacteriaNetmotilityAbility to perform movementno87.1
125439BacteriaNetgram_stainReaction to gram-stainingpositive91.8
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthmicroaerophile96.9

External links

@ref: 44715

culture collection no.: CCUG 4209, ATCC 12386, NCTC 9993

straininfo link

  • @ref: 97271
  • straininfo: 7989

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20415147Identification and characterization of Streptococcus agalactiae isolates using 16S rRNA sequencing and cellular fatty acid composition analysis.Qasem JA, Al-Zenki S, Al-Marzouk APak J Biol Sci10.3923/pjbs.2010.9.152010Animals, Base Sequence, Fatty Acids/*analysis, Fishes/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, DNA, Streptococcus agalactiae/*chemistry/classification/*geneticsGenetics
Pathogenicity34817207Garlic: An Alternative Treatment for Group B Streptococcus.Torres KAM, Lima SMRR, Torres LMB, Gamberini MT, Silva Junior PIDMicrobiol Spectr10.1128/Spectrum.00170-212021Anti-Bacterial Agents/chemistry/*pharmacology, Chromatography, High Pressure Liquid, Drug Evaluation, Preclinical, Garlic/*chemistry, Humans, Microbial Sensitivity Tests, Plant Extracts/chemistry/*pharmacology, Streptococcal Infections/drug therapy/*microbiology, Streptococcus agalactiae/*drug effects/genetics/physiology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44715Curators of the CCUGhttps://www.ccug.se/strain?id=4209Culture Collection University of Gothenburg (CCUG) (CCUG 4209)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68381Automatically annotated from API rID32STR
97271Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID7989.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG