Strain identifier

BacDive ID: 14158

Type strain: Yes

Species: Novosphingobium resinovorum

Strain history: CIP <- 2007, DSMZ <- NCIMB

NCBI tax ID(s): 158500 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 3179

BacDive-ID: 14158

DSM-Number: 7478

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Novosphingobium resinovorum DSM 7478 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Erythrobacteraceae.

NCBI tax id

  • NCBI tax id: 158500
  • Matching level: species

strain history

@refhistory
3179<- NCIMB
122160CIP <- 2007, DSMZ <- NCIMB

doi: 10.13145/bacdive14158.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Erythrobacteraceae
  • genus: Novosphingobium
  • species: Novosphingobium resinovorum
  • full scientific name: Novosphingobium resinovorum (Delaporte and Daste 1956) Lim et al. 2007

  • synonyms

    @refsynonym
    20215Flavobacterium resinovorum
    20215Sphingomonas subarctica
    20215Novosphingobium subarcticum

@ref: 3179

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Erythrobacteraceae

genus: Novosphingobium

species: Novosphingobium resinovorum

full scientific name: Novosphingobium resinovorum (Delaporte and Daste 1956) Lim et al. 2007

type strain: yes

Morphology

cell morphology

  • @ref: 122160
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3179NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
37362MEDIUM 328- for nutrient agaryesDistilled water make up to (1000.000 ml);Agar (15.000 g);Peptone (5.000g);Beef extract (3.000 g)
122160CIP Medium 328yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=328

culture temp

@refgrowthtypetemperaturerange
3179positivegrowth25mesophilic
37362positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 122160
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371salicin-builds acid from17814
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
122160nitrate-reduction17632
122160nitrite-reduction16301

metabolite production

  • @ref: 122160
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
122160oxidase+
122160catalase+1.11.1.6
122160urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122160-+++-++++-++-+-++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
122160------------------------+/--+/-+/---------------+/-------

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
37362FranceFRAEurope
122160FranceFRAEuropeEnvironment, Soil, forest, Pinus maritima

taxonmaps

  • @ref: 69479
  • File name: preview.99_4616.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_795;97_926;98_3465;99_4616&stattab=map
  • Last taxonomy: Novosphingobium resinovorum subclade
  • 16S sequence: EF029110
  • Sequence Identity:
  • Total samples: 390
  • soil counts: 47
  • aquatic counts: 131
  • animal counts: 176
  • plant counts: 36

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
31791Risk group (German classification)
1221601Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Novosphingobium resinovorum strain NCIMB 8767 16S ribosomal RNA gene, partial sequence
  • accession: EF029110
  • length: 1411
  • database: ena
  • NCBI tax ID: 158500

External links

@ref: 3179

culture collection no.: DSM 7478, ATCC 33545, CIP 109724, NCIMB 8767, LMG 8367

straininfo link

  • @ref: 83324
  • straininfo: 10267

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17684279Reclassification of Flavobacterium resinovorum Delaporte and Daste 1956 as Novosphingobium resinovorum comb. nov., with Novosphingobium subarcticum (Nohynek et al. 1996) Takeuchi et al. 2001 as a later heterotypic synonym.Lim YW, Moon EY, Chun JInt J Syst Evol Microbiol10.1099/ijs.0.64852-02007DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Flavobacterium/*classification/genetics, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sphingomonadaceae/*classification/geneticsGenetics
Phylogeny21097643Novosphingobium sediminicola sp. nov. isolated from freshwater sediment.Baek SH, Lim JH, Jin L, Lee HG, Lee STInt J Syst Evol Microbiol10.1099/ijs.0.024307-02010Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fresh Water/*microbiology, Geologic Sediments/*microbiology, Glycosphingolipids/analysis, Molecular Sequence Data, Phylogeny, Pigments, Biological/metabolism, Polyamines/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sphingomonadaceae/*classification/genetics/*isolation & purification/physiologyGenetics
Phylogeny22544801Novosphingobium barchaimii sp. nov., isolated from hexachlorocyclohexane-contaminated soil.Niharika N, Moskalikova H, Kaur J, Sedlackova M, Hampl A, Damborsky J, Prokop Z, Lal RInt J Syst Evol Microbiol10.1099/ijs.0.039826-02012Bacterial Typing Techniques, Base Composition, Czech Republic, DNA, Bacterial/genetics, Fatty Acids/analysis, *Hexachlorocyclohexane, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants, Spermidine/analysis, Sphingomonadaceae/*classification/genetics/isolation & purification, Ubiquinone/analogs & derivatives/analysisGenetics
Phylogeny23104365Novosphingobium lindaniclasticum sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium isolated from an HCH dumpsite.Saxena A, Anand S, Dua A, Sangwan N, Khan F, Lal RInt J Syst Evol Microbiol10.1099/ijs.0.045443-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, *Hexachlorocyclohexane, India, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, *Soil Pollutants, Spermidine/analysis, Sphingomonadaceae/*classification/genetics/isolation & purification, Ubiquinone/analogs & derivatives/analysisGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3179Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7478)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7478
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37362Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7499
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83324Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID10267.1StrainInfo: A central database for resolving microbial strain identifiers
122160Curators of the CIPCollection of Institut Pasteur (CIP 109724)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109724