Strain identifier

BacDive ID: 141490

Type strain: No

Species: Alcaligenes faecalis

Strain history: IAM 12372 <-- ATCC 19209 ("Alcaligenes odorans subsp. viridans") <-- NCTC 10388 <-- R. G. Mitchell.

NCBI tax ID(s): 511 (species)

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General

@ref: 44523

BacDive-ID: 141490

keywords: genome sequence, Bacteria, mesophilic, motile

description: Alcaligenes faecalis CCUG 2350 is a mesophilic, motile bacterium that was isolated from Human wound.

NCBI tax id

  • NCBI tax id: 511
  • Matching level: species

strain history

  • @ref: 67770
  • history: IAM 12372 <-- ATCC 19209 ("Alcaligenes odorans subsp. viridans") <-- NCTC 10388 <-- R. G. Mitchell.

doi: 10.13145/bacdive141490.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Alcaligenes
  • species: Alcaligenes faecalis
  • full scientific name: Alcaligenes faecalis Castellani and Chalmers 1919 (Approved Lists 1980)

@ref: 44523

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Alcaligenes

species: Alcaligenes faecalis

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes94.994
6948099.995negative

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.985

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837418257ornithine-degradation
6837429016arginine-hydrolysis
6837425094lysine-degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol-builds acid from
6837417306maltose-builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate+assimilation
6837427897tryptophan-energy source
6837417634D-glucose-builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose-builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose-builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol-builds acid from

metabolite production

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68374L-aspartate arylamidase+3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase-3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase+
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
44523-------++------+---------------+

Isolation, sampling and environmental information

isolation

@refsample type
44523Human wound
67770Wound

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Other#Wound

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Alcaligenes faecalis subsp. faecalis NCTC10388GCA_900445215contigncbi32001
66792Alcaligenes faecalis subsp. faecalis strain NCTC1038832001.3wgspatric32001

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno97.952no
anaerobicno98.364no
halophileno85.827no
spore-formingno95.491no
glucose-utilno78.59no
motileyes83.13no
flagellatedno52.904no
aerobicyes86.399no
thermophileno98.833no
glucose-fermentno89.876no

External links

@ref: 44523

culture collection no.: CCUG 2350, ATCC 19209, NCTC 10388, JCM 20525, IAM 12372

straininfo link

  • @ref: 97155
  • straininfo: 757

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44523Curators of the CCUGhttps://www.ccug.se/strain?id=2350Culture Collection University of Gothenburg (CCUG) (CCUG 2350)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68374Automatically annotated from API ID32E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
97155Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID757.1