Strain identifier
BacDive ID: 141490
Type strain:
Species: Alcaligenes faecalis
Strain history: IAM 12372 <-- ATCC 19209 ("Alcaligenes odorans subsp. viridans") <-- NCTC 10388 <-- R. G. Mitchell.
NCBI tax ID(s): 511 (species)
version 8.1 (current version)
General
@ref: 44523
BacDive-ID: 141490
keywords: genome sequence, Bacteria, mesophilic, motile
description: Alcaligenes faecalis CCUG 2350 is a mesophilic, motile bacterium that was isolated from Human wound.
NCBI tax id
- NCBI tax id: 511
- Matching level: species
strain history
- @ref: 67770
- history: IAM 12372 <-- ATCC 19209 ("Alcaligenes odorans subsp. viridans") <-- NCTC 10388 <-- R. G. Mitchell.
doi: 10.13145/bacdive141490.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Alcaligenaceae
- genus: Alcaligenes
- species: Alcaligenes faecalis
- full scientific name: Alcaligenes faecalis Castellani and Chalmers 1919 (Approved Lists 1980)
@ref: 44523
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Alcaligenaceae
genus: Alcaligenes
species: Alcaligenes faecalis
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 94.994 | |
69480 | 99.995 | negative |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.985 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68374 | 18257 | ornithine | - | degradation |
68374 | 29016 | arginine | - | hydrolysis |
68374 | 25094 | lysine | - | degradation |
68374 | 16199 | urea | - | hydrolysis |
68374 | 18403 | L-arabitol | - | builds acid from |
68374 | 18024 | D-galacturonic acid | - | builds acid from |
68374 | Potassium 5-ketogluconate | - | builds acid from | |
68374 | 16899 | D-mannitol | - | builds acid from |
68374 | 17306 | maltose | - | builds acid from |
68374 | 15963 | ribitol | - | builds acid from |
68374 | 18394 | palatinose | - | builds acid from |
68374 | 15792 | malonate | + | assimilation |
68374 | 27897 | tryptophan | - | energy source |
68374 | 17634 | D-glucose | - | builds acid from |
68374 | 17992 | sucrose | - | builds acid from |
68374 | 30849 | L-arabinose | - | builds acid from |
68374 | 18333 | D-arabitol | - | builds acid from |
68374 | 27082 | trehalose | - | builds acid from |
68374 | 62345 | L-rhamnose | - | builds acid from |
68374 | 17268 | myo-inositol | - | builds acid from |
68374 | 17057 | cellobiose | - | builds acid from |
68374 | 30911 | sorbitol | - | builds acid from |
metabolite production
- @ref: 68374
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68374
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68374 | L-aspartate arylamidase | + | 3.4.11.21 |
68374 | alpha-maltosidase | - | |
68374 | alpha-galactosidase | - | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | - | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | - | 3.2.1.21 |
68374 | lipase | + | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | - | 4.1.1.18 |
68374 | arginine dihydrolase | - | 3.5.3.6 |
68374 | ornithine decarboxylase | - | 4.1.1.17 |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
44523 | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
44523 | Human wound |
67770 | Wound |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body-Site | #Other | #Wound |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Alcaligenes faecalis subsp. faecalis NCTC10388 | GCA_900445215 | contig | ncbi | 32001 |
66792 | Alcaligenes faecalis subsp. faecalis strain NCTC10388 | 32001.3 | wgs | patric | 32001 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
gram-positive | no | 97.952 | no |
anaerobic | no | 98.364 | no |
halophile | no | 85.827 | no |
spore-forming | no | 95.491 | no |
glucose-util | no | 78.59 | no |
motile | yes | 83.13 | no |
flagellated | no | 52.904 | no |
aerobic | yes | 86.399 | no |
thermophile | no | 98.833 | no |
glucose-ferment | no | 89.876 | no |
External links
@ref: 44523
culture collection no.: CCUG 2350, ATCC 19209, NCTC 10388, JCM 20525, IAM 12372
straininfo link
- @ref: 97155
- straininfo: 757
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
44523 | Curators of the CCUG | https://www.ccug.se/strain?id=2350 | Culture Collection University of Gothenburg (CCUG) (CCUG 2350) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68374 | Automatically annotated from API ID32E | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
97155 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID757.1 |