Strain identifier

BacDive ID: 14143

Type strain: Yes

Species: Novosphingobium aromaticivorans

Strain Designation: F199

Strain history: CIP <- 1997, D. L. Balkwill, Florida State Univ., Tallahassee, FL, USA: strain SMCC F199

NCBI tax ID(s): 279238 (strain), 48935 (species)

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General

@ref: 4720

BacDive-ID: 14143

DSM-Number: 12444

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Novosphingobium aromaticivorans F199 is a mesophilic, Gram-negative bacterium that was isolated from subsurface cretaceous age formation at 410 m depth.

NCBI tax id

NCBI tax idMatching level
48935species
279238strain

strain history

@refhistory
4720<- D.L. Balkwill <- J.K. Fredrickson; F199
385341997, D. L. Balkwill, Florida State Univ., Tallahassee, FL, USA: strain SMCC F199
116502CIP <- 1997, D. L. Balkwill, Florida State Univ., Tallahassee, FL, USA: strain SMCC F199

doi: 10.13145/bacdive14143.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Erythrobacteraceae
  • genus: Novosphingobium
  • species: Novosphingobium aromaticivorans
  • full scientific name: Novosphingobium aromaticivorans corrig. (Balkwill et al. 1997) Takeuchi et al. 2001

  • synonyms

    @refsynonym
    20215Novosphingobium aromaticivorum
    20215Sphingomonas stygia
    20215Sphingomonas aromaticivorans
    20215Novosphingobium stygium
    20215Novosphingobium stygiae

@ref: 4720

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Erythrobacteraceae

genus: Novosphingobium

species: Novosphingobium aromaticivorans

full scientific name: Novosphingobium aromaticivorans (Balkwill et al. 1997) Takeuchi et al. 2001

strain designation: F199

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.954
116502negativerod-shapedno

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4720REACTIVATION WITH LIQUID MEDIUM 464 (DSMZ Medium 464a)yeshttps://mediadive.dsmz.de/medium/464aName: REACTIVATION WITH LIQUID MEDIUM 464 (DSMZ Medium 464a) Composition: Agar 15.0 g/l Tryptone 5.0 g/l Yeast extract 2.5 g/l Dextrose 1.0 g/l Distilled water
4720MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457)yeshttps://mediadive.dsmz.de/medium/457Name: MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) Composition: Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water
38534MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116502CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
4720positivegrowth30mesophilic
38534positivegrowth30mesophilic
116502positivegrowth25-37mesophilic
116502nogrowth5psychrophilic
116502nogrowth10psychrophilic
116502nogrowth41thermophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no98
69480no99.992

halophily

@refsaltgrowthtested relationconcentration
116502NaClpositivegrowth0-2 %
116502NaClnogrowth4 %
116502NaClnogrowth6 %
116502NaClnogrowth8 %
116502NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
68369malate-assimilation25115
68369adipate+assimilation17128
68369decanoate-assimilation27689
68369gluconate-assimilation24265
68369maltose+assimilation17306
68369N-acetylglucosamine+assimilation59640
68369D-mannitol-assimilation16899
68369D-mannose+assimilation16024
68369L-arabinose-assimilation30849
68369D-glucose+assimilation17634
68369gelatin-hydrolysis5291
68369esculin+hydrolysis4853
68369urea-hydrolysis16199
68369arginine-hydrolysis29016
68369D-glucose-fermentation17634
68369tryptophan-energy source27897
68369nitrate-reduction17632
116502citrate-carbon source16947
116502esculin+hydrolysis4853
116502nitrate-reduction17632
116502nitrite-reduction16301
116502nitrate-respiration17632

antibiotic resistance

  • @ref: 116502
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11650235581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
116502oxidase+
116502beta-galactosidase+3.2.1.23
116502alcohol dehydrogenase-1.1.1.1
116502gelatinase-
116502amylase-
116502DNase-
116502caseinase-3.4.21.50
116502catalase+1.11.1.6
116502tween esterase+
116502lecithinase-
116502lipase-
116502lysine decarboxylase-4.1.1.18
116502ornithine decarboxylase-4.1.1.17
116502protease-
116502tryptophan deaminase-
116502urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116502-+++-+++--++-+++++--

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
4720-----+-++-+-++--+---+
4720-----+-++-+-++--+---+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116502----+/------+++--------++/-+++-+--++--+/-+/-+------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116502+---+--++++----++++--+-+++---------+--+---------------++---+--+++-----------------------++++-----+-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
4720subsurface cretaceous age formation at 410 m depthS.C., AllendaleUSAUSANorth America
116502Environment, Atlantic coastal plain sediments (saturated)South CarolinaUnited States of AmericaUSANorth America1989

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial

taxonmaps

  • @ref: 69479
  • File name: preview.99_2616.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_437;97_499;98_1073;99_2616&stattab=map
  • Last taxonomy: Novosphingobium aromaticivorans
  • 16S sequence: U20756
  • Sequence Identity:
  • Total samples: 2830
  • soil counts: 632
  • aquatic counts: 1844
  • animal counts: 209
  • plant counts: 145

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
47201Risk group (German classification)
1165021Risk group (French classification)

Sequence information

16S sequences

  • @ref: 4720
  • description: Novosphingobium aromaticivorans strain SMCC F199 16S small subunit ribosomal RNA gene, partial sequence
  • accession: U20756
  • length: 1406
  • database: ena
  • NCBI tax ID: 48935

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Novosphingobium aromaticivorans DSM 12444GCA_000013325completencbi279238
66792Novosphingobium aromaticivorans DSM 12444279238.34plasmidpatric279238
66792Novosphingobium aromaticivorans DSM 12444279238.18completepatric279238
66792Novosphingobium aromaticivorans DSM 12444279238.33plasmidpatric279238
66792Novosphingobium aromaticivorans DSM 12444640427126completeimg48935

GC content

  • @ref: 4720
  • GC-content: 64.2

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno98no
motileno92.431no
flagellatedno98.439no
gram-positiveno97.36no
anaerobicno98.986no
halophileno95.431no
spore-formingno93.79no
thermophileno94.505yes
glucose-utilyes90.816yes
aerobicyes90.892no
glucose-fermentno92.87no

External links

@ref: 4720

culture collection no.: DSM 12444, SMCC F199, CIP 105152, ATCC 700278, IFO 16084, CCUG 56443, HAMBI 2257

straininfo link

  • @ref: 83308
  • straininfo: 11669

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism8995822Taxonomic study of aromatic-degrading bacteria from deep-terrestrial-subsurface sediments and description of Sphingomonas aromaticivorans sp. nov., Sphingomonas subterranea sp. nov., and Sphingomonas stygia sp. nov.Balkwill DL, Drake GR, Reeves RH, Fredrickson JK, White DC, Ringelberg DB, Chandler DP, Romine MF, Kennedy DW, Spadoni CMInt J Syst Bacteriol10.1099/00207713-47-1-1911997Alcohols/metabolism, Bacteriological Techniques, Base Composition, Catalase/metabolism, Culture Media/metabolism, DNA Fingerprinting, Disaccharides/metabolism, Fatty Acids/analysis, Fermentation, Gelatin/metabolism, Glucose/metabolism, Gram-Negative Aerobic Bacteria/*classification/genetics/metabolism, Hexoses/metabolism, Hydrolases/metabolism, Indoles/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Pentoses/metabolism, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Soil Microbiology, Urease/metabolism, Water MicrobiologyPhylogeny
Metabolism18478524Identification of bacterial carotenoid cleavage dioxygenase homologues that cleave the interphenyl alpha,beta double bond of stilbene derivatives via a monooxygenase reaction.Marasco EK, Schmidt-Dannert CChembiochem10.1002/cbic.2007007242008Animals, Bacteria/*enzymology/metabolism, Carotenoids/biosynthesis/*metabolism, Dioxygenases/*metabolism, Genome, Bacterial, Mixed Function Oxygenases/*metabolism, Oxygen/metabolism, Phylogeny, *Sequence Homology, Amino Acid, Staining and Labeling, Stilbenes/*chemistry/*metabolismGenetics
Enzymology19342781Purification, crystallization and preliminary X-ray analysis of cytochrome P450 219A1 from Novosphingobium aromaticivorans DSM 12444.Hong C, Bell SG, Yang W, Wang H, Hao Y, Li X, Zhou W, Bartlam M, Wong LLActa Crystallogr Sect F Struct Biol Cryst Commun10.1107/S17443091090056482009Crystallization, Crystallography, X-Ray, Cytochrome P-450 Enzyme System/*chemistry/*isolation & purification, Sphingomonadaceae/*enzymology, Substrate SpecificityPhylogeny
Phylogeny19873754[Predominant strains of polycyclic aromatic hydrocarbon-degrading consortia from deep sea of the Middle Atlantic Ridge].Cui Z, Shao ZWei Sheng Wu Xue Bao2009Atlantic Ocean, Bacteria/classification/genetics/*isolation & purification/*metabolism, Biodegradation, Environmental, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, Polycyclic Aromatic Hydrocarbons/*metabolism, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Water Pollutants, Chemical/*metabolismMetabolism
Enzymology20576606Molecular characterization of a class I P450 electron transfer system from Novosphingobium aromaticivorans DSM12444.Yang W, Bell SG, Wang H, Zhou W, Hoskins N, Dale A, Bartlam M, Wong LL, Rao ZJ Biol Chem10.1074/jbc.M110.1183492010Adrenodoxin/chemistry, Bacterial Proteins/*chemistry, Camphor 5-Monooxygenase/*chemistry, Ferredoxin-NADP Reductase/chemistry, Ferredoxins/chemistry, Hydrophobic and Hydrophilic Interactions, NADP/chemistry, Protein Structure, Quaternary, Protein Structure, Secondary, Sphingomonadaceae/*enzymology, Structural Homology, Protein
Metabolism20950270The structure of CYP101D2 unveils a potential path for substrate entry into the active site.Yang W, Bell SG, Wang H, Zhou W, Bartlam M, Wong LL, Rao ZBiochem J10.1042/BJ201010172011Bacterial Proteins/*chemistry/metabolism, Binding Sites, Camphor/metabolism, Camphor 5-Monooxygenase/*chemistry/metabolism, Catalytic Domain, Crystallography, X-Ray, Oxygen/metabolism, Protein Binding, Protein Conformation, Substrate Specificity
Metabolism21154803Structural Analysis of CYP101C1 from Novosphingobium aromaticivorans DSM12444.Ma M, Bell SG, Yang W, Hao Y, Rees NH, Bartlam M, Zhou W, Wong LL, Rao ZChembiochem10.1002/cbic.2010005372011Camphor 5-Monooxygenase/*chemistry/metabolism, Catalytic Domain, Heme/chemistry/metabolism, Kinetics, Models, Molecular, Norisoprenoids/metabolism, Sphingomonadaceae/*enzymology, Substrate SpecificityEnzymology
Enzymology21821906Crystallization and preliminary X-ray analysis of CYP153C1 from Novosphingobium aromaticivorans DSM12444.Zhou R, Huang C, Zhang A, Bell SG, Zhou W, Wong LLActa Crystallogr Sect F Struct Biol Cryst Commun10.1107/S174430911102464X2011Crystallization, Crystallography, X-Ray, Cytochrome P-450 Enzyme System/*chemistry, Sphingomonadaceae/*enzymology
Metabolism22349230Structure and function of CYP108D1 from Novosphingobium aromaticivorans DSM12444: an aromatic hydrocarbon-binding P450 enzyme.Bell SG, Yang W, Yorke JA, Zhou W, Wang H, Harmer J, Copley R, Zhang A, Zhou R, Bartlam M, Rao Z, Wong LLActa Crystallogr D Biol Crystallogr10.1107/S090744491200145X2012Bacterial Proteins/*chemistry/genetics/metabolism, Binding Sites/physiology, Biocatalysis, Biodegradation, Environmental, Catalytic Domain, Crystallography, X-Ray, Cytochrome P-450 Enzyme System/*chemistry/genetics/metabolism, Ferredoxins/*chemistry/metabolism, Hydrocarbons, Aromatic/*chemistry, Protein Structure, Secondary, Sphingomonadaceae/*enzymology/metabolism, Substrate SpecificityEnzymology
Metabolism23199737Discovery of pinoresinol reductase genes in sphingomonads.Fukuhara Y, Kamimura N, Nakajima M, Hishiyama S, Hara H, Kasai D, Tsuji Y, Narita-Yamada S, Nakamura S, Katano Y, Fujita N, Katayama Y, Fukuda M, Kajita S, Masai EEnzyme Microb Technol10.1016/j.enzmictec.2012.10.0042012Arabidopsis/genetics, Arabidopsis Proteins/metabolism, Bacterial Proteins/*genetics/metabolism, Furans/*metabolism, *Genes, Bacterial, Lignans/*metabolism, Lignin/metabolism, Molecular Structure, Oxidoreductases/*genetics/metabolism, Recombinant Fusion Proteins/metabolism, Sequence Homology, Amino Acid, Species Specificity, Sphingomonadaceae/enzymology/*genetics, Substrate SpecificityEnzymology
Phylogeny23568197Novosphingobium ginsenosidimutans sp. nov., with the ability to convert ginsenoside.Kim JK, He D, Liu QM, Park HY, Jung MS, Yoon MH, Kim SC, Im WTJ Microbiol Biotechnol10.4014/jmb.1212.120532013Bacterial Typing Techniques, Base Composition, Biotransformation, Cluster Analysis, Culture Media/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/microbiology, Ginsenosides/*metabolism, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sphingomonadaceae/*classification/genetics/*isolation & purification/metabolism, Temperature, beta-Glucosidase/metabolismMetabolism
Metabolism23832606The dynamics of camphor in the cytochrome P450 CYP101D2.Vohra S, Musgaard M, Bell SG, Wong LL, Zhou W, Biggin PCProtein Sci10.1002/pro.23092013Camphor/*chemistry/metabolism, Cytochrome P-450 Enzyme System/*chemistry, Models, Molecular, *Molecular Dynamics Simulation, Sphingomonadaceae/chemistry/*enzymologyEnzymology
Metabolism24123814Structure and function of a novel LD-carboxypeptidase a involved in peptidoglycan recycling.Das D, Herve M, Elsliger MA, Kadam RU, Grant JC, Chiu HJ, Knuth MW, Klock HE, Miller MD, Godzik A, Lesley SA, Deacon AM, Mengin-Lecreulx D, Wilson IAJ Bacteriol10.1128/JB.00900-132013Amino Acid Sequence, Binding Sites, Carboxypeptidases/*chemistry/*metabolism, Crystallography, X-Ray, Models, Molecular, Molecular Sequence Data, Peptidoglycan/*metabolism, Protein Binding, Protein Conformation, Protein Multimerization, Sphingomonadaceae/*enzymologyGenetics
Metabolism24604198Structural basis for heavy metal detoxification by an Atm1-type ABC exporter.Lee JY, Yang JG, Zhitnitsky D, Lewinson O, Rees DCScience10.1126/science.12464892014ATP-Binding Cassette Transporters/*chemistry/genetics/metabolism, Bacterial Proteins/*chemistry/genetics/metabolism, Binding Sites, Crystallography, X-Ray, Glutathione/chemistry, Inactivation, Metabolic, Metals, Heavy/*metabolism/*toxicity, Protein Multimerization, Protein Structure, Secondary, Sphingomonadaceae/*metabolism, Substrate Specificity
Phylogeny24737793Novosphingobium kunmingense sp. nov., isolated from a phosphate mine.Xie F, Quan S, Liu D, He W, Wang Y, Ma H, Chen G, Chao Y, Qian SInt J Syst Evol Microbiol10.1099/ijs.0.057273-02014Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Mining, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphates/*chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Sphingomonadaceae/*classification/genetics/isolation & purification, Ubiquinone/chemistryGenetics
Enzymology25232892A group of sequence-related sphingomonad enzymes catalyzes cleavage of beta-aryl ether linkages in lignin beta-guaiacyl and beta-syringyl ether dimers.Gall DL, Ralph J, Donohue TJ, Noguera DREnviron Sci Technol10.1021/es503886d2014Bacterial Proteins/*chemistry, Catalysis, Dimerization, Ethers/*chemistry, Glutathione Transferase/*chemistry, Lignin/*chemistry, Oxidoreductases/*chemistry, Sphingomonadaceae/*enzymology, Stereoisomerism, Substrate Specificity
Phylogeny25320143Proposal of Novosphingobium rhizosphaerae sp. nov., isolated from the rhizosphere.Kampfer P, Martin K, McInroy JA, Glaeser SPInt J Syst Evol Microbiol10.1099/ijs.0.070375-02014Alabama, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Sphingomonadaceae/*classification/genetics/isolation & purification, Ubiquinone/chemistry, Zea mays/microbiologyGenetics
Phylogeny27306976Description of Novosphingobiumflavum sp. nov., isolated from soil.Nguyen TM, Myung SW, Jang H, Kim JInt J Syst Evol Microbiol10.1099/ijsem.0.0012422016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/chemistry, Sphingomonadaceae/*classification/genetics/isolation & purification, Ubiquinone/chemistryTranscriptome
31739667Rearrangement-Free Hydroxylation of Methylcubanes by a Cytochrome P450: The Case for Dynamical Coupling of C-H Abstraction and Rebound.Sarkar MR, Houston SD, Savage GP, Williams CM, Krenske EH, Bell SG, De Voss JJJ Am Chem Soc10.1021/jacs.9b080642019
Genetics32078771A New Biosensor for Stilbenes and a Cannabinoid Enabled by Genome Mining of a Transcriptional Regulator.Sun H, Zhao H, Ang ELACS Synth Biol10.1021/acssynbio.9b004432020Biosensing Techniques/*methods, Cannabinoids, Gene Expression Regulation, Genome, Bacterial/genetics, Metabolic Engineering/methods, Resveratrol/metabolism, Sphingomonadaceae/genetics, *Stilbenes/analysis/metabolism, Synthetic Biology/*methodsMetabolism
32883797Genome-Wide Identification of Transcription Start Sites in Two Alphaproteobacteria, Rhodobacter sphaeroides 2.4.1 and Novosphingobium aromaticivorans DSM 12444.Myers KS, Vera JM, Lemmer KC, Linz AM, Landick R, Noguera DR, Donohue TJMicrobiol Resour Announc10.1128/MRA.00880-202020
Phylogeny33411666Novosphingobium olei sp. nov., with the ability to degrade diesel oil, isolated from oil-contaminated soil and proposal to reclassify Novosphingobium stygium as a later heterotypic synonym of Novosphingobium aromaticivorans.Chaudhary DK, Dahal RH, Kim DU, Kim JInt J Syst Evol Microbiol10.1099/ijsem.0.0046282021Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Petroleum Pollution, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants, Sphingomonadaceae/*classification/isolation & purification, Ubiquinone/analogs & derivatives/chemistryTranscriptome
Metabolism33579679Redundancy in aromatic O-demethylation and ring opening reactions in Novosphingobium aromaticivorans and their impact in the metabolism of plant derived phenolics.Perez JM, Kontur WS, Gehl C, Gille DM, Ma Y, Niles AV, Umana G, Donohue TJ, Noguera DRAppl Environ Microbiol10.1128/AEM.02794-202021
Biotechnology33636323Pathway discovery and engineering for cleavage of a beta-1 lignin-derived biaryl compound.Presley GN, Werner AZ, Katahira R, Garcia DC, Haugen SJ, Ramirez KJ, Giannone RJ, Beckham GT, Michener JKMetab Eng10.1016/j.ymben.2021.02.0032021Lignin, *Pseudomonas putida/genetics, *Sphingomonadaceae

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4720Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12444)https://www.dsmz.de/collection/catalogue/details/culture/DSM-12444
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
38534Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17140
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68369Automatically annotated from API 20NE
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83308Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID11669.1StrainInfo: A central database for resolving microbial strain identifiers
116502Curators of the CIPCollection of Institut Pasteur (CIP 105152)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105152