Strain identifier

BacDive ID: 141333

Type strain: No

Species: Acinetobacter higginsii

Variant: genomospecies 16

Strain history: CIP <- 1970, M. Piéchaud, Inst. Pasteur, Paris, France, Moraxella lwoffi var. liquefaciens <- 1969, ATCC, Acinetobacter lwoffi <- S.D. Henriksen: strain 4233/62, Alcaligenes haemolysans

NCBI tax ID(s): 472 (species)

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General

@ref: 44303

BacDive-ID: 141333

keywords: genome sequence, Bacteria, obligate aerobe, Gram-negative

description: Acinetobacter higginsii CCUG 996 is an obligate aerobe, Gram-negative bacterium that was isolated from Human urine.

NCBI tax id

  • NCBI tax id: 472
  • Matching level: species

strain history

  • @ref: 119578
  • history: CIP <- 1970, M. Piéchaud, Inst. Pasteur, Paris, France, Moraxella lwoffi var. liquefaciens <- 1969, ATCC, Acinetobacter lwoffi <- S.D. Henriksen: strain 4233/62, Alcaligenes haemolysans

doi: 10.13145/bacdive141333.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter higginsii
  • full scientific name: Acinetobacter higginsii Nemec et al. 2023

@ref: 44303

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter sp.

variant: genomospecies 16

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
125438negative99
119578negativerod-shapedno

colony morphology

  • @ref: 119578
  • hemolysis ability: 1

Culture and growth conditions

culture medium

  • @ref: 119578
  • name: CIP Medium 72
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
119578positivegrowth10-37
119578nogrowth41
119578nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 119578
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
125438no94.962
125439no97

halophily

@refsaltgrowthtested relationconcentration
119578NaClpositivegrowth0-4 %
119578NaClnogrowth6 %
119578NaClnogrowth8 %
119578NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11957816947citrate+carbon source
11957817632nitrate-reduction
11957816301nitrite-reduction
11957817234glucose-degradation
11957817632nitrate-respiration

antibiotic resistance

  • @ref: 119578
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11957815688acetoin-
11957817234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
119578oxidase-
119578beta-galactosidase-3.2.1.23
119578gelatinase+
119578catalase+1.11.1.6
119578gamma-glutamyltransferase+2.3.2.2
119578urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119578--++-+----+---------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119578------------------------------------------------++---+---+---+++-+-+-------+++-++-------++++++--+++

Isolation, sampling and environmental information

isolation

@refsample type
44303Human urine
119578Urine

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Urine

Safety information

risk assessment

  • @ref: 119578
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter sp. CIP 70.181217700.3wgspatric1217700
66792Acinetobacter sp. CIP 70.182565956678draftimg1217700
66792Acinetobacter genomosp. 16BJ CIP 70.18GCA_000369525scaffoldncbi70347

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthmicroaerophile87.9
125439BacteriaNetgram_stainReaction to gram-stainingnegative82.7
125439BacteriaNetmotilityAbility to perform movementno61.7
125439BacteriaNetspore_formationAbility to form endo- or exosporesno97
125438gram-positivegram-positivePositive reaction to Gram-stainingno99no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.889yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes88.981no
125438spore-formingspore-formingAbility to form endo- or exosporesno94.962no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno98.5no
125438motile2+flagellatedAbility to perform flagellated movementno70.822no

External links

@ref: 44303

culture collection no.: CCUG 996, CIP 70.18, NCDC KC727, ATCC 17988, LMG 1031

straininfo link

  • @ref: 97020
  • straininfo: 288

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44303Curators of the CCUGhttps://www.ccug.se/strain?id=996Culture Collection University of Gothenburg (CCUG) (CCUG 996)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
97020Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID288.1
119578Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2070.18Collection of Institut Pasteur (CIP 70.18)
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG