Strain identifier

BacDive ID: 141274

Type strain: No

Species: Vibrio cholerae

Strain history: CIP <- 1963, NCTC <- 1949, H.J. Bensted: strain Nanking 32/124, subgroup II of Gardner and Venkatra man

NCBI tax ID(s): 666 (species)

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General

@ref: 44221

BacDive-ID: 141274

keywords: Bacteria, facultative anaerobe, Gram-negative, motile, rod-shaped

description: Vibrio cholerae CCUG 537 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from Unknown source.

NCBI tax id

  • NCBI tax id: 666
  • Matching level: species

strain history

  • @ref: 118250
  • history: CIP <- 1963, NCTC <- 1949, H.J. Bensted: strain Nanking 32/124, subgroup II of Gardner and Venkatra man

doi: 10.13145/bacdive141274.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio cholerae
  • full scientific name: Vibrio cholerae Pacini 1854 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Vibrio albensis

@ref: 44221

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales

family: Vibrionaceae

genus: Vibrio

species: Vibrio cholerae

type strain: no

Morphology

cell morphology

  • @ref: 118250
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

  • @ref: 118250
  • name: CIP Medium 72
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
118250positivegrowth15-41
118250nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 118250
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
118250NaClpositivegrowth2-4 %
118250NaClnogrowth0 %
118250NaClnogrowth6 %
118250NaClnogrowth8 %
118250NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis
11825016947citrate+carbon source
1182504853esculin-hydrolysis
11825017234glucose+fermentation
11825017716lactose-fermentation
11825017632nitrate+reduction
11825016301nitrite-reduction
118250132112sodium thiosulfate-builds gas from
6837418257ornithine-degradation
6837429016arginine-hydrolysis
6837425094lysine-degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol-builds acid from
6837417306maltose-builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan+energy source
6837417634D-glucose-builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose-builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose-builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol-builds acid from

antibiotic resistance

  • @ref: 118250
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6837435581indoleyes
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno
11825035581indoleyes

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6837435581indole+
6836815688acetoin-
6836835581indole+
11825015688acetoin+
11825017234glucose+

enzymes

@refvalueactivityec
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase+
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase+
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17
68368cytochrome oxidase+1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23
118250oxidase+
118250beta-galactosidase+3.2.1.23
118250alcohol dehydrogenase-1.1.1.1
118250gelatinase+
118250amylase+
118250DNase+
118250caseinase+3.4.21.50
118250catalase+1.11.1.6
118250tween esterase+
118250gamma-glutamyltransferase+2.3.2.2
118250lecithinase+
118250lipase-
118250lysine decarboxylase+4.1.1.18
118250ornithine decarboxylase-4.1.1.17
118250phenylalanine ammonia-lyase-4.3.1.24
118250tryptophan deaminase-
118250urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118250-+++-+----++-+------

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
44221+-+++---+--++---+---+

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
44221-------+-+------+-+-----------+-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
118250++++---+-----------+-----------+-+---------------++--------++------------------++-----+--+++-------

Isolation, sampling and environmental information

isolation

  • @ref: 118250
  • sample type: Unknown source
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

Safety information

risk assessment

  • @ref: 118250
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 44221

culture collection no.: CCUG 537, ATCC 14733, NCTC 8042, CIP 63.42, WDCM 00203, WDCM 00191

straininfo link

@refstraininfo
9696936158
96970264323

literature

  • topic: Phylogeny
  • Pubmed-ID: 5473901
  • title: Polyphasic taxonomy of the genus vibrio: numerical taxonomy of Vibrio cholerae, Vibrio parahaemolyticus, and related Vibrio species.
  • authors: Colwell RR
  • journal: J Bacteriol
  • DOI: 10.1128/jb.104.1.410-433.1970
  • year: 1970
  • mesh: Alcaligenes/classification, Anti-Bacterial Agents/pharmacology, Arthrobacter/classification, Carbohydrate Metabolism, Cell Membrane, Computers, DNA, Bacterial/analysis/isolation & purification, Microscopy, Electron, Pseudomonas/classification, Ribosomes, Spirillum/classification, Vibrio/*classification/cytology/drug effects/growth & development/metabolism
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44221Curators of the CCUGhttps://www.ccug.se/strain?id=537Culture Collection University of Gothenburg (CCUG) (CCUG 537)
68368Automatically annotated from API 20E
68374Automatically annotated from API ID32E
68382Automatically annotated from API zym
96969Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID36158.1
96970Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID264323.1
118250Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2063.42Collection of Institut Pasteur (CIP 63.42)