Strain identifier
version 8.1 (current version)
General
@ref: 44194
BacDive-ID: 141252
keywords: genome sequence, Bacteria, Gram-negative
description: Aggregatibacter aphrophilus CCUG 414 is a Gram-negative bacterium that was isolated from Human blood,fatal endocarditis.
NCBI tax id
- NCBI tax id: 732
- Matching level: species
doi: 10.13145/bacdive141252.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pasteurellales
- family: Pasteurellaceae
- genus: Aggregatibacter
- species: Aggregatibacter aphrophilus
- full scientific name: Aggregatibacter aphrophilus (Khairat 1940) Nørskov-Lauritsen and Kilian 2006
synonyms
@ref synonym 20215 Haemophilus paraphrophilus 20215 Haemophilus aphrophilus
@ref: 44194
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pasteurellales
family: Pasteurellaceae
genus: Aggregatibacter
species: Aggregatibacter aphrophilus
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.897
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.994 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68377 | 17634 | D-glucose | + | builds acid from |
68377 | 15824 | D-fructose | + | builds acid from |
68377 | 17306 | maltose | + | builds acid from |
68377 | 17992 | sucrose | + | builds acid from |
68377 | 18257 | ornithine | - | degradation |
68377 | 16199 | urea | - | hydrolysis |
68377 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68377 | tryptophan deaminase | - | 4.1.99.1 |
68377 | gamma-glutamyltransferase | + | 2.3.2.2 |
68377 | proline-arylamidase | - | 3.4.11.5 |
68377 | beta-galactosidase | + | 3.2.1.23 |
68377 | alkaline phosphatase | + | 3.1.3.1 |
68377 | lipase | - | |
68377 | urease | - | 3.5.1.5 |
68377 | ornithine decarboxylase | - | 4.1.1.17 |
68377 | beta-lactamase | - | 3.5.2.6 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 44194 C12:0 0.2 12 44194 C14:0 19.2 14 44194 C16:0 30.4 16 44194 C18:0 0.6 18 44194 C12:0 3OH 0.1 13.455 44194 C12:0 ALDE ? 0.1 10.915 44194 C13:0 ISO 2OH 0.4 13.814 44194 C14:0 3OH/C16:1 ISO I 9.6 15.485 44194 C16:1 ω5c 0.2 15.908 44194 C16:1 ω7c 35.4 15.819 44194 C18:1 ω9c 1.4 17.769 44194 C18:2 ω6,9c/C18:0 ANTE 1.4 17.724 44194 Unidentified 0.1 13.766 44194 Unidentified 0.3 15.171 44194 unknown 14.503 0.8 14.503 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
44194 | - | + | + | + | + | - | - | - | + | + | - | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 44194
- sample type: Human blood,fatal endocarditis
- sampling date: 1938
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Fluids | #Blood |
#Infection | #Inflammation | |
#Infection | #Patient |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Aggregatibacter aphrophilus ATCC 19415 | GCA_001680765 | scaffold | ncbi | 732 |
66792 | Aggregatibacter aphrophilus strain ATCC 19415 | 732.22 | wgs | patric | 732 |
66792 | Aggregatibacter aphrophilus ATCC 19415 | 2814123194 | draft | img | 732 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 94.906 | no |
gram-positive | no | 98.419 | no |
anaerobic | no | 95.684 | no |
aerobic | no | 94.763 | no |
halophile | no | 56.512 | no |
spore-forming | no | 98.487 | no |
glucose-util | yes | 54.313 | no |
thermophile | no | 96.009 | no |
motile | no | 88.79 | no |
glucose-ferment | yes | 57.444 | no |
External links
@ref: 44194
culture collection no.: CCUG 414, ATCC 19415, NCTC 5886
straininfo link
- @ref: 96949
- straininfo: 46561
literature
- topic: Pathogenicity
- Pubmed-ID: 9872109
- title: Epithelial cell invasion by Actinobacillus actinomycetemcomitans strains from restriction fragment-length polymorphism groups associated with juvenile periodontitis or carrier status.
- authors: Lepine G, Caudry S, DiRienzo JM, Ellen RP
- journal: Oral Microbiol Immunol
- DOI: 10.1111/j.1399-302x.1998.tb00689.x
- year: 1998
- mesh: Aggregatibacter actinomycetemcomitans/classification/genetics/*pathogenicity/physiology, Aggressive Periodontitis/*microbiology, Bacterial Toxins/biosynthesis, Carrier State/microbiology, Epithelial Cells/microbiology, Exotoxins/biosynthesis, Humans, KB Cells/microbiology, Polymorphism, Restriction Fragment Length, Virulence
- topic2: Phylogeny
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
44194 | Curators of the CCUG | https://www.ccug.se/strain?id=414 | Culture Collection University of Gothenburg (CCUG) (CCUG 414) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68377 | Automatically annotated from API NH | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
96949 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID46561.1 |