Strain identifier

BacDive ID: 141252

Type strain: No

Species: Aggregatibacter aphrophilus

NCBI tax ID(s): 732 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 44194

BacDive-ID: 141252

keywords: genome sequence, Bacteria, Gram-negative

description: Aggregatibacter aphrophilus CCUG 414 is a Gram-negative bacterium that was isolated from Human blood,fatal endocarditis.

NCBI tax id

  • NCBI tax id: 732
  • Matching level: species

doi: 10.13145/bacdive141252.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pasteurellales
  • family: Pasteurellaceae
  • genus: Aggregatibacter
  • species: Aggregatibacter aphrophilus
  • full scientific name: Aggregatibacter aphrophilus (Khairat 1940) Nørskov-Lauritsen and Kilian 2006
  • synonyms

    @refsynonym
    20215Haemophilus paraphrophilus
    20215Haemophilus aphrophilus

@ref: 44194

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pasteurellales

family: Pasteurellaceae

genus: Aggregatibacter

species: Aggregatibacter aphrophilus

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.897

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.994

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837717992sucrose+builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68377
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase+2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase+3.2.1.23
68377alkaline phosphatase+3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    44194C12:00.212
    44194C14:019.214
    44194C16:030.416
    44194C18:00.618
    44194C12:0 3OH0.113.455
    44194C12:0 ALDE ?0.110.915
    44194C13:0 ISO 2OH0.413.814
    44194C14:0 3OH/C16:1 ISO I9.615.485
    44194C16:1 ω5c0.215.908
    44194C16:1 ω7c35.415.819
    44194C18:1 ω9c1.417.769
    44194C18:2 ω6,9c/C18:0 ANTE1.417.724
    44194Unidentified0.113.766
    44194Unidentified0.315.171
    44194unknown 14.5030.814.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
44194-++++---++-+-

Isolation, sampling and environmental information

isolation

  • @ref: 44194
  • sample type: Human blood,fatal endocarditis
  • sampling date: 1938

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood
#Infection#Inflammation
#Infection#Patient

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aggregatibacter aphrophilus ATCC 19415GCA_001680765scaffoldncbi732
66792Aggregatibacter aphrophilus strain ATCC 19415732.22wgspatric732
66792Aggregatibacter aphrophilus ATCC 194152814123194draftimg732

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno94.906no
gram-positiveno98.419no
anaerobicno95.684no
aerobicno94.763no
halophileno56.512no
spore-formingno98.487no
glucose-utilyes54.313no
thermophileno96.009no
motileno88.79no
glucose-fermentyes57.444no

External links

@ref: 44194

culture collection no.: CCUG 414, ATCC 19415, NCTC 5886

straininfo link

  • @ref: 96949
  • straininfo: 46561

literature

  • topic: Pathogenicity
  • Pubmed-ID: 9872109
  • title: Epithelial cell invasion by Actinobacillus actinomycetemcomitans strains from restriction fragment-length polymorphism groups associated with juvenile periodontitis or carrier status.
  • authors: Lepine G, Caudry S, DiRienzo JM, Ellen RP
  • journal: Oral Microbiol Immunol
  • DOI: 10.1111/j.1399-302x.1998.tb00689.x
  • year: 1998
  • mesh: Aggregatibacter actinomycetemcomitans/classification/genetics/*pathogenicity/physiology, Aggressive Periodontitis/*microbiology, Bacterial Toxins/biosynthesis, Carrier State/microbiology, Epithelial Cells/microbiology, Exotoxins/biosynthesis, Humans, KB Cells/microbiology, Polymorphism, Restriction Fragment Length, Virulence
  • topic2: Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44194Curators of the CCUGhttps://www.ccug.se/strain?id=414Culture Collection University of Gothenburg (CCUG) (CCUG 414)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68377Automatically annotated from API NH
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
96949Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID46561.1