Strain identifier

BacDive ID: 141241

Type strain: No

Species: Achromobacter denitrificans

NCBI tax ID(s): 32002 (species)

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General

@ref: 44179

BacDive-ID: 141241

keywords: Bacteria

description: Achromobacter denitrificans CCUG 366 is a bacterium that was isolated from Human pleural fluid.

NCBI tax id

  • NCBI tax id: 32002
  • Matching level: species

doi: 10.13145/bacdive141241.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter denitrificans
  • full scientific name: Achromobacter denitrificans (Rüger and Tan 1983 ex Leifson and Hugh 1954) Coenye et al. 2003

  • synonyms

    @refsynonym
    20215Alcaligenes denitrificans
    20215Achromobacter xylosoxidans subsp. denitrificans
    20215Alcaligenes xylosoxidans subsp. denitrificans

@ref: 44179

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter denitrificans

type strain: no

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    44179C12:01.312
    44179C14:05.114
    44179C15:00.615
    44179C16:031.116
    44179C17:0117
    44179C18:01.318
    44179C12:0 2OH2.313.178
    44179C12:0 ALDE ?0.710.915
    44179C14:0 3OH/C16:1 ISO I6.915.485
    44179C15:1 ω6c0.414.856
    44179C16:0 2OH0.417.233
    44179C16:1 ω7c29.815.819
    44179C17:0 CYCLO11.116.888
    44179C18:1 ω7c /12t/9t6.517.824
    44179C18:2 ω6,9c/C18:0 ANTE0.617.724
    44179C19:0 CYCLO ω8c0.718.9
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
44179--++-+----+---------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
44179+-------------+++++++

Isolation, sampling and environmental information

isolation

  • @ref: 44179
  • sample type: Human pleural fluid
  • country: Denmark
  • origin.country: DNK
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Oral cavity and Airways#Pleural fluid
#Infection#Patient
#Host Body-Site#Oral cavity and airways

External links

@ref: 44179

culture collection no.: CCUG 366, LMG 3459, LMG 3342

straininfo link

  • @ref: 96939
  • straininfo: 813

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44179Curators of the CCUGhttps://www.ccug.se/strain?id=366Culture Collection University of Gothenburg (CCUG) (CCUG 366)
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
96939Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID813.1