Strain identifier

BacDive ID: 141140

Type strain: Yes

Species: Marinobacter aromaticivorans

Strain Designation: D15-8P

NCBI tax ID(s): 1494078 (species)

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General

@ref: 44057

BacDive-ID: 141140

keywords: genome sequence, 16S sequence, Bacteria, halotolerant, Gram-negative, rod-shaped, colony-forming

description: Marinobacter aromaticivorans D15-8P is a halotolerant, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1494078
  • Matching level: species

doi: 10.13145/bacdive141140.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Alteromonadaceae
  • genus: Marinobacter
  • species: Marinobacter aromaticivorans
  • full scientific name: Marinobacter aromaticivorans Cui et al. 2016

@ref: 44057

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Alteromonadaceae

genus: Marinobacter

species: Marinobacter aromaticivorans

strain designation: D15-8P

type strain: yes

Morphology

cell morphology

  • @ref: 44057
  • gram stain: negative
  • cell length: 1.3-2.6 µm
  • cell width: 0.4 µm
  • cell shape: rod-shaped

colony morphology

  • @ref: 44057
  • colony color: creamy white with light yellow
  • colony shape: circular
  • medium used: M8 agar

Culture and growth conditions

culture medium

  • @ref: 44057
  • name: M8 agar
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
44057positivegrowth10-40
44057positiveoptimum25mesophilic

culture pH

@refabilitytypepHPH range
44057positivegrowth5.5-9.5alkaliphile
44057positiveoptimum7.0-8.0

Physiology and metabolism

halophily

@refhalophily levelsaltgrowthtested relationconcentration
44057halotolerantNaClpositivegrowth0.5-10 %(w/v)
44057NaClpositiveoptimum0.5-1.5 %(w/v)

observation

@refobservation
44057binary fission
44057biodegrading naphthalene
44057biodegrading phenanthrene
44057biodegrading anthracene

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4405717925alpha-D-glucose-assimilation
4405736219alpha-lactose-assimilation
4405717057cellobiose-assimilation
4405718333D-arabitol-assimilation
4405715824D-fructose-assimilation
4405712936D-galactose-assimilation
4405727605D-psicose-assimilation
4405717924D-sorbitol-assimilation
4405717113erythritol-assimilation
4405728066gentiobiose-assimilation
4405730849L-arabinose-assimilation
4405718287L-fucose-assimilation
4405762345L-rhamnose-assimilation
440576359lactulose-assimilation
4405728053melibiose-assimilation
44057320055methyl beta-D-glucopyranoside-assimilation
4405717268myo-inositol-assimilation
44057506227N-acetylglucosamine-assimilation
4405716634raffinose-assimilation
4405717234glucose-fermentation
4405716991dna-hydrolysis
440575291gelatin-hydrolysis
4405717632nitrate-reduction
44057286442-oxopentanoate+assimilation
4405718024D-galacturonic acid+assimilation
4405717784D-glucosaminic acid+assimilation
4405716024D-mannose+assimilation
4405723652dextrin+assimilation
4405724996lactate+assimilation
4405716977L-alanine+assimilation
4405729985L-glutamate+assimilation
4405715729L-ornithine+assimilation
4405717203L-proline+assimilation
4405718183L-pyroglutamic acid+assimilation
4405717306maltose+assimilation
4405751850methyl pyruvate+assimilation
4405741865sebacic acid+assimilation
44057143136succinamate+assimilation
4405730031succinate+assimilation
4405717992sucrose+assimilation
4405727082trehalose+assimilation
4405753426tween 80+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
4405748923erythromycinyesyes15 µg (disc)
4405728077rifampicinyesyes5 µg (disc)
440578309polymyxin byesyes300 Unit (disc)
4405727902tetracyclineyesyes30 µg (disc)
4405717698chloramphenicolyesyes30 µg (disc)
44057100147nalidixic acidyesyes30 µg (disc)
440577809oxacillinyesyes1 µg (disc)
440576104kanamycinyesyes30 µg (disc)
440573393carbenicillinyesyes100 µg (disc)
4405718208penicillin gyesyes10 Unit (disc)
4405728971ampicillinyesyes10 µg (disc)
4405728001vancomycinyesyes30 µg (disc)

metabolite production

@refChebi-IDmetaboliteproduction
4405715688acetoinno
4405735581indoleno

metabolite tests

@refChebi-IDmetabolitemethylred-testvoges-proskauer-test
4405717234glucose-
4405715688acetoin-

enzymes

@refvalueactivityec
44057cytochrome oxidase+1.9.3.1
44057catalase+1.11.1.6

Isolation, sampling and environmental information

isolation

  • @ref: 44057
  • sample type: marine sediment
  • geographic location: South China Sea
  • latitude: 19.977
  • longitude: 111.421
  • enrichment culture: ONR7a medium
  • enrichment culture composition: Dyksterhouse et al., 1995; supplemented with phenanthrene (0.2 g/l)
  • enrichment culture duration: 21 days
  • isolation procedure: Culture was transferred twice to the same medium and then to M8 medium.

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_98992.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_89;96_227;97_249;98_2389;99_98992&stattab=map
  • Last taxonomy: Marinobacter
  • 16S sequence: FJ799007
  • Sequence Identity:
  • Total samples: 9
  • soil counts: 1
  • aquatic counts: 8

Sequence information

16S sequences

  • @ref: 44057
  • description: 16S rRNA gene sequence
  • accession: FJ799007
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Marinobacter aromaticivorans D15-8PGCA_002806975contigncbi1494078
66792Marinobacter aromaticivorans D15-8P2791355103draftimg1494078

GC content

  • @ref: 44057
  • GC-content: 56.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 44057

culture collection no.: CGMCC 1.11015, KCTC 23781

literature

  • topic: Phylogeny
  • Pubmed-ID: 26518711
  • title: Marinobacter aromaticivorans sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from sea sediment.
  • authors: Cui Z, Gao W, Xu G, Luan X, Li Q, Yin X, Huang D, Zheng L
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000722
  • year: 2015
  • mesh: Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/microbiology, Marinobacter/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Polycyclic Aromatic Hydrocarbons/*metabolism, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
44057Zhisong Cui, Wei Gao, Guangfei Xu, Xiao Luan, Qian Li, Xiaofei Yin, Deming Huang and Li ZhengMarinobacter aromaticivorans sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from sea sediment10.1099/ijsem.0.000722IJSEM 66: 535-359 201626518711
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/